Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00850 ATGGCAGACCCTTATACCAATTTCTTCAACGGCTGGTTCAACTTCATCCCTGTAGCTCCTCATTTTTCTTCTGTCACTTCTTACTACTCAGAACCCTCTTTTAATTTCTCTGCTCCTTTTCCCAGTTTGAACAAGGACGACGACGACATCATAATTACAAGTCAAAGTACTGCTAATTCCTCCTTCCAATCACATTCCTTATTTCCGCCGTTATCTGATCTCTCGACTCCTTCAATACAAGCCCTTCCTTTGATAAACCAATTAAGCACAGATATTTACGAAAACTCTGGCAGTGCAGCAATGGAGGAGAAAGAGGCGAAGGATTTGGCCATCGAAGAGGACGATGAATCCTTGTCTGTGGCTCTAAGCATAGGCCTTCCTTGCCATAATTTAGATTCAGAAACAAAGGAAATTATTTCGCCTTCATTTTCGTGTTCGGGCGAGAAGGATGAAGGCAGTTTGGTATCAGATTACCCTTTGTATAGACTGAACAACGGTCAGTACTGGATTCCTACCCCTTCTCAGATTCTGATTGGTCCTACTCAATTTTCATGTCCACTTTGCTCTAAGGCTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGCCATGGCTCCCAATACAGAAAAGGACCAGACTCTCTGAAAGGAATCCAGCCAACCGCCATGTTAAAGCTGCCTTGCTACTGCTGCGCAAATGGCTGCAAATACAACATCGACCACTCTCGATCAAGGCCACTCAAAGATTTCAGAACTCTGCAAACCCATTACAAGAGAAAGCACGGGACTAAACCCTTCAGTTGCAGGAAATGCAGCAAACCATTTGCAGTGAAAGGCGACTGGAGAACCCACGAGAAGAACTGTGGGAAAATTTGGTATTGCTCTTGTGGATCTGATTTTAAGCACAAAAGATCGCTGAAAGATCACGTTAGGGCTTTCGGCCATAGCCATGGAGCTGTTGGCCTTGATTGCTTTGAAGAAGAGAACGATCCTTCGTCTGAAGTGGAACAAGATGGCTATAGTTTAACGTGA 1035 43.96 MADPYTNFFNGWFNFIPVAPHFSSVTSYYSEPSFNFSAPFPSLNKDDDDIIITSQSTANSSFQSHSLFPPLSDLSTPSIQALPLINQLSTDIYENSGSAAMEEKEAKDLAIEEDDESLSVALSIGLPCHNLDSETKEIISPSFSCSGEKDEGSLVSDYPLYRLNNGQYWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPDSLKGIQPTAMLKLPCYCCANGCKYNIDHSRSRPLKDFRTLQTHYKRKHGTKPFSCRKCSKPFAVKGDWRTHEKNCGKIWYCSCGSDFKHKRSLKDHVRAFGHSHGAVGLDCFEEENDPSSEVEQDGYSLT 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47527530 47529724 + Bma029974.1 Bma09g00850 88896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00850 344 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Bma09g00850 344 SUPERFAMILY beta-beta-alpha zinc fingers 176 205 IPR036236 -
Bma09g00850 344 PANTHER ZINC FINGER PROTEIN WIP2 1 339 IPR043584 GO:0003700|GO:0010468
Bma09g00850 344 SUPERFAMILY beta-beta-alpha zinc fingers 253 287 IPR036236 -
Bma09g00850 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Bma09g00850 344 SMART c2h2final6 293 316 IPR013087 -
Bma09g00850 344 SMART c2h2final6 183 205 IPR013087 -
Bma09g00850 344 SMART c2h2final6 267 287 IPR013087 -
Bma09g00850 344 Gene3D Classic Zinc Finger 182 205 - -
Bma09g00850 344 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 339 - -
Bma09g00850 344 Gene3D Classic Zinc Finger 225 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02723 Bma-Chr1:84574183 Bma09g00850 Bma-Chr9:47527530 2.56E-130 dispersed
Bma06g00769 Bma-Chr6:39469829 Bma09g00850 Bma-Chr9:47527530 2.62E-96 dispersed
Bma07g00193 Bma-Chr7:2421379 Bma09g00850 Bma-Chr9:47527530 1.12E-76 dispersed
Bma07g01471 Bma-Chr7:50364342 Bma09g00850 Bma-Chr9:47527530 3.83E-24 dispersed
Bma09g00850 Bma-Chr9:47527530 Bma10g00024 Bma-Chr10:346417 6.50E-23 dispersed
Bma09g00850 Bma-Chr9:47527530 Bma04g00457 Bma-Chr4:3823478 4.64E-127 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57877 None None None None Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00850 - - qsu:111986391 427.557