Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00886 GCCATGGCCAGACCTCAGCAGAGATTCCGAGGCGTCCGCCAACGCCACTGGGGTTCTTGGGTCTCCGAAATCCGCCACCCTTTACTGAAGACGAGAATTTGGCTAGGAACGTTCGAAACGGCCGAGGACGCCGCGAGAGCTTACGACGAAGCGGCGAGGCTAATGTGCGGGCCGAAAGCTCGAACCAATTTCTCGTATAATCAGAACGAGCAACAGTCTTCTTCCTCGAAGCTTCTGTCTGCAACTCTAACTTCAAAGCTTCAAAAATGCTACATGGCCTCCCTTCAAATGGCCAAAAAGCAACCCCCCAAACAGCCTCAACAAACCCACTATTCGTACGCCTCGACTCCGAGCTGCATTCCCCAAAATAGCACCGGGACGCACATTCAGGCGCCGGAGAAGTCGTTGATTGAAGCCGGTCAGCAGTTCCAGCATCTTGAAGATGATGATATCGAGCAGATGATCCAGGAGCTGCTTGATCTTGGATCGTTTGAGCTTCGATCTGCCGTTTCTTCTTAA 519 52.6 AMARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFSYNQNEQQSSSSKLLSATLTSKLQKCYMASLQMAKKQPPKQPQQTHYSYASTPSCIPQNSTGTHIQAPEKSLIEAGQQFQHLEDDDIEQMIQELLDLGSFELRSAVSS 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 48133704 48134332 + Bma030018.1 Bma09g00886 88932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00886 172 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677
Bma09g00886 172 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Bma09g00886 172 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Bma09g00886 172 CDD AP2 7 64 IPR001471 GO:0003700|GO:0006355
Bma09g00886 172 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 168 - -
Bma09g00886 172 Gene3D AP2/ERF domain 7 66 IPR036955 GO:0003700|GO:0006355
Bma09g00886 172 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
Bma09g00886 172 Pfam AP2 domain 8 57 IPR001471 GO:0003700|GO:0006355
Bma09g00886 172 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
Bma09g00886 172 PANTHER ETHYLENE RESPONSE FACTOR 2 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01270 Bma-Chr1:17156055 Bma09g00886 Bma-Chr9:48133704 7.42E-55 dispersed
Bma09g00886 Bma-Chr9:48133704 Bma13g00772 Bma-Chr13:27535521 2.81E-35 dispersed
Bma09g00886 Bma-Chr9:48133704 Bma06g01078 Bma-Chr6:47608439 3.78E-33 transposed
Bma09g00886 Bma-Chr9:48133704 Bma06g01066 Bma-Chr6:47475190 2.97E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57879 PF00847 AP2 1.80E-11 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00886 - - cit:102619724 197.593