Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00903 ATGGCTCAGATTTTGCTTCACGGTACACTTCATGTCACGATCTATGAAATCGATCATCTGAAAACTGGAGGAAACAATATTTTCACCAAATTTTTTGCGAGCGTCGAAGAGACTGTTGGGTTTGGAAAAGGGGTTACAAAACTCTATGCCACTATCGATCTCGAAAAGGCTCGAGTGGGGAGGACTAGAATACTAGAAAAAGATCATGCTAACCCAAGATGGTATGAATCTTTTCACATCTATTGCGCCCATATGGCTGCCGACGTTATATTCACTGTCAAGGACGATAATCCAATCGGGGCAAGTCTAATCGGAAGGGCATACGTTCCAGTCCAAGATATTTTAGATGGGCAAGAAATCGATAAATGGGTTGAAATCTTAGACAATGACAAAAACCCTATTCATGGAAACTCTAAAATTCATGTCAAGCTTCAATATTTTGATGTCTCTAAGGAACGCTGTTGGGGTCGGGGGATTAAAAGTGCAAAATATCCAGGAGTTCCTTACACGTTTTTCTCTCAGAGACAAGGATGTAAGGTCTCTTTATACCAAGATGTTCACATTCCCGACGGTTTTGTTCCTAAAATCCCGCTTGCCGGTGGGAAGTTCTACGAGCCTCACCGATGTTGGGAAGATGTTTTTGATGCAATAAACAATGCAAAGCACCTCATCTACATTACGGGTTGGTCTGTTTATACGGAAATTACTCTAATTAGGGACTCGAGGAGGCCTAAACCCGGTGGAGATATCATTCTTGGAGATCTACTGAAGAAGAAAGCAAGTGAAGGTGTTAGAGTTCTTATGCTTGTTTGGGATGATAGAACTTCTGTCCCTATACTCAAAAAAGACGGACTGATGGCCACTCACGACCAAGAAACCGAACATTTCTTTGATAAGAGTGAGGTGCATTGCGTCCTCTGCCCTCGGAATCCCGATGATGGTGGAAGCATAATTCAAGATTTGCAAATCTCTACTATGTTCACTCATCATCAAAAGATTGTCGTGGTGGATAGTGCTATGCCTAGCGAAGGATCAACAAAGAGGCGAATTGTGAGTTTTGTTGGCGGAATCGATCTTTGCGACGGAAGATATGATACGCCGTTCCATTCGCTTTTCAGGACGTTGGATACTGTCCATCACGATGATTTTCACCAGCCGAACTTTGCTGGGGCTACGATCGCTAAAGGAGGACCTAGAGAGCCTTGGCACGATATTCACTCCCGGCTCGAAGGGCCCATCGCGTGGGATGTCTTGTTTAATTTTGAGCAGAGATGGAAGAAGCAAGGCGGGAAGGATATTCTTCTTCAACTGAGGGATATGGAGGAAATAATCATCCCACCTTCTCCGGTTATGTTCCCGGATGATCGTGAAACTTGGAACGTTCAGTTGTTTCGGTCAATCGACGGGGGGGCTGCGTTTGGCTTTCCTGAAAAACCGGAAGATGCTGCAAGAGCCGGACTTGTCAGCGGGAAAGATAATATCATCGATAGAAGCATTCAAGATGGGTATATAAATGCGATTAGGCGAGCCAAAAATTTTATTTACATTGAAAATCAGTATTTCTTGGGGAGCTGTTTTGGTTGGAGCCCCGATGATATCAAGCCTGAAGATATTGGAGCTCTGCATCTGATTCCAAAGGAGCTTTCCATGAAGATTGTTAGTAAGATTGAAGCGGGAGAGAGATTTTCGGTCTATATTGTTGTCCCTATGTGGCCGGAGGGAATGCCTGAAAGTGGATCAGTTCAGGCCATATTAGATTGGCAGAGGAGGACGTTGGAGATGATGTACAAAGATATAACTCAGGCATTAAACGCAAAGGGTATCGAGGAAGACCCTCGAAACTATTTGACGCTCTTCTGCCTCGGAAATCGTGAAGTTAAGAAGCCAGGCGAGTATGAGCCTTCGGAAAAACCAGAGGAGGATACAGATTATATGAGAGCTCAGCAGGCTAGGCGATTCATGATTTATGTTCATGCCAAGATGATGATCGTGGACGATGAGTACATAATCATCGGCTCGGCCAATATCAACCAAAGGTCGATGGATGGAGCAAGAGACTCGGAGATAGCCATGGGGGCCTACCAGACGTGTCATCTGTCGACCCACGTCCCGGCTCGCGGGCAAATCCATGGTTTTCGAATGTCGTTATGGTACGAACACCTCGGAATGCTAGACGATTGCTTCCTTCAGCCCGAGAGCGAGGAATGTGTGAAGAAGGTGAACCAAATTGCCGACAAGTACTGGGATCTCTACTCCGGCGAGACTCTGGAGCATGACCTGCCCGGCCACCTCCTTCGTTATCCGATCGGAGTTTCCGGCGAAGGAGAAGTCACGGAGCTGCCGGGATTCGAGCACTTTCCGGACACTAAAGCTCGAGTGCTTGGAACCAAATCCGACTATCTCCCTCCCATTCTCACCACTTAG 2424 46.0 MAQILLHGTLHVTIYEIDHLKTGGNNIFTKFFASVEETVGFGKGVTKLYATIDLEKARVGRTRILEKDHANPRWYESFHIYCAHMAADVIFTVKDDNPIGASLIGRAYVPVQDILDGQEIDKWVEILDNDKNPIHGNSKIHVKLQYFDVSKERCWGRGIKSAKYPGVPYTFFSQRQGCKVSLYQDVHIPDGFVPKIPLAGGKFYEPHRCWEDVFDAINNAKHLIYITGWSVYTEITLIRDSRRPKPGGDIILGDLLKKKASEGVRVLMLVWDDRTSVPILKKDGLMATHDQETEHFFDKSEVHCVLCPRNPDDGGSIIQDLQISTMFTHHQKIVVVDSAMPSEGSTKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTVHHDDFHQPNFAGATIAKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDILLQLRDMEEIIIPPSPVMFPDDRETWNVQLFRSIDGGAAFGFPEKPEDAARAGLVSGKDNIIDRSIQDGYINAIRRAKNFIYIENQYFLGSCFGWSPDDIKPEDIGALHLIPKELSMKIVSKIEAGERFSVYIVVPMWPEGMPESGSVQAILDWQRRTLEMMYKDITQALNAKGIEEDPRNYLTLFCLGNREVKKPGEYEPSEKPEEDTDYMRAQQARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQTCHLSTHVPARGQIHGFRMSLWYEHLGMLDDCFLQPESEECVKKVNQIADKYWDLYSGETLEHDLPGHLLRYPIGVSGEGEVTELPGFEHFPDTKARVLGTKSDYLPPILTT 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 48415787 48418904 - Bma030036.2 Bma09g00903 88949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00903 807 SUPERFAMILY Phospholipase D/nuclease 481 737 - -
Bma09g00903 807 PANTHER PHOSPHOLIPASE D ALPHA 1 2 807 - -
Bma09g00903 807 SMART pld_4 325 363 IPR001736 GO:0003824
Bma09g00903 807 SMART pld_4 653 680 IPR001736 GO:0003824
Bma09g00903 807 Pfam Phospholipase D C terminal 725 797 IPR024632 -
Bma09g00903 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Bma09g00903 807 PANTHER PHOSPHOLIPASE D 2 807 IPR015679 -
Bma09g00903 807 SUPERFAMILY Phospholipase D/nuclease 157 444 - -
Bma09g00903 807 Gene3D Endonuclease Chain A 201 442 - -
Bma09g00903 807 CDD PLDc_pPLDalpha_2 491 700 - -
Bma09g00903 807 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Bma09g00903 807 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Bma09g00903 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Bma09g00903 807 SMART C2_3c 9 123 IPR000008 -
Bma09g00903 807 CDD C2_plant_PLD 2 147 - -
Bma09g00903 807 Gene3D Endonuclease Chain A 475 695 - -
Bma09g00903 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Bma09g00903 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Bma09g00903 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Bma09g00903 807 Gene3D C2 domain 6 154 IPR035892 -
Bma09g00903 807 Pfam C2 domain 8 126 IPR000008 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma09g00903 Bma10g00806 CCT
Bma09g00903 Bma10g00806 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00903 Bma-Chr9:48415787 Bma15g00335 Bma-Chr15:3307069 0 dispersed
Bma05g00178 Bma-Chr5:5051076 Bma09g00903 Bma-Chr9:48415787 0 transposed
Bma05g00190 Bma-Chr5:5241623 Bma09g00903 Bma-Chr9:48415787 0 transposed
Bma05g01024 Bma-Chr5:48786210 Bma09g00903 Bma-Chr9:48415787 2.87E-19 transposed
Bma05g01121 Bma-Chr5:50033692 Bma09g00903 Bma-Chr9:48415787 0 transposed
Bma07g00594 Bma-Chr7:8662859 Bma09g00903 Bma-Chr9:48415787 0 transposed
Bma12g00109 Bma-Chr12:1720156 Bma09g00903 Bma-Chr9:48415787 0 transposed
Bma14g01317 Bma-Chr14:24301806 Bma09g00903 Bma-Chr9:48415787 8.14E-16 transposed
Bma10g00806 Bma-Chr10:13224797 Bma09g00903 Bma-Chr9:48415787 0 wgd
Bma15g00411 Bma-Chr15:4461030 Bma09g00903 Bma-Chr9:48415787 1.77E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00903 K01115 - twl:120010960 1456.04