Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00967 ATGAAGGGTTTGCAGTTTCAGCAAGTTTTGGAGGAGAACATGTCTAATTTGACTTCAGCTTCAGGTGATCAAGCAAGTGTATCGTCTGATCAAAGAAATCAGCAATACTTGACTCAACAGGTTCAAAATCTTCAACCTTCAGCGAAGAAGAAGAGAAATCTTCCTGGCAATCCAGACCCAGGAGCAGAAGTGATAGCTTTGTCACCCAAGACGCTAATGGCGACAAACAGATTCATCTGCGAGATCTGCAACAAAGGGTTTCAGAGAGATCAAAACCTGCAACTTCACAGGAGAGGGCATAATCTGCCATGGAAACTGAAGCAAAGATCAAGCAAAGAGGTGAAGAAGAAGGTTTACATTTGCCCAGAAACAAGCTGCGTCCACCATGACCCATCAAGAGCTCTGGGCGACCTAACTGGAATCAAGAAACACTTCTGCAGAAAACATGGCGAAAAGAAGTGGAAATGTGACAAATGCTCGAAGAAATATGCTGTTCAATCAGATTGGAAGGCTCATTCCAAAACCTGTGGAACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCCAGGCGGGATAGCTTCATCACTCACAGAGCCTTCTGCGACGCTTTAGCAGAAGAAAGTAGTAGAACTAATATTGCAGCCAATTCACTTCTCTCCTCTCGTCAATCTGTTTCTTCTTCCTCCATCTCTCTCTTACCATCTCCACCATTGTTGAGTTCTCAAAATCCACATCCATTTTCTCTCAGAAACGAGCATCAGCCTCTCTCTCTCAGACCAGACTGTCCTCCTTGGCTCCCCTCTCTTGCCCCACCTCCCGTCGATTTCCAGTCACCACCGGCCATCTTCCCCTCAGCCTTAACCGGTGATTTTACGCCAACCCACCAAGATTTATCCCTCCTTCAAACTCCTACTCCTCCTCTTTACCAGTCGTCTCTTTACCCTCACATATCAGCCACTGCATTGCTTCAGAAGGCAGCTCGGATGGGTGCCATCGTGAGCTCGAAAACGGCGTCTTTATCTACTCCGGCGACGATGACGAATCCGAACCAGATTTTGGAGAATTCCGCCATTAATACAACCAGTAGCTTTGGCTTTAACCTTTCTGCAAGCGAAGGTTTTCCTCATTCGTTACCAAGTAATTACGGGAATTCTCTAACCTCTACATCTGGGTTTCAAGAATCTTGTTTCGAGGAAGCATTTGGTGGGATTATGACGCAAAAGAAAGCTGTGAATACGAACGACATTATCATGCCAAAAACAAGCTCTGCAATGTCATATATGATCAGCAAGAATGAAGGAGGTGGAAATGGCGAAAGCTTGACCAGAGACTTCTTGGGTCTGAGAGCTTTCTCCCACAGCGATATTCTTAATATTACAGGCTTTGGAAACTCCATCAACACTCTGCAGAATCACCAGAAGCCATGGCAGGGCTAG 1440 45.56 MKGLQFQQVLEENMSNLTSASGDQASVSSDQRNQQYLTQQVQNLQPSAKKKRNLPGNPDPGAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKKVYICPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESSRTNIAANSLLSSRQSVSSSSISLLPSPPLLSSQNPHPFSLRNEHQPLSLRPDCPPWLPSLAPPPVDFQSPPAIFPSALTGDFTPTHQDLSLLQTPTPPLYQSSLYPHISATALLQKAARMGAIVSSKTASLSTPATMTNPNQILENSAINTTSSFGFNLSASEGFPHSLPSNYGNSLTSTSGFQESCFEEAFGGIMTQKKAVNTNDIIMPKTSSAMSYMISKNEGGGNGESLTRDFLGLRAFSHSDILNITGFGNSINTLQNHQKPWQG 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 49199775 49201639 - Bma030110.1 Bma09g00967 89013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00967 479 Pfam Zinc-finger double-stranded RNA-binding 78 100 IPR022755 -
Bma09g00967 479 SMART c2h2final6 154 174 IPR013087 -
Bma09g00967 479 SMART c2h2final6 78 100 IPR013087 -
Bma09g00967 479 SMART c2h2final6 119 149 IPR013087 -
Bma09g00967 479 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 463 - -
Bma09g00967 479 Gene3D Classic Zinc Finger 130 212 - -
Bma09g00967 479 Gene3D Classic Zinc Finger 58 128 - -
Bma09g00967 479 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 16 463 - -
Bma09g00967 479 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Bma09g00967 479 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Bma09g00967 479 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02212 Bma-Chr1:79042450 Bma09g00967 Bma-Chr9:49199775 2.33E-119 dispersed
Bma09g00967 Bma-Chr9:49199775 Bma15g01004 Bma-Chr15:39068700 5.63E-118 dispersed
Bma13g01231 Bma-Chr13:45549782 Bma09g00967 Bma-Chr9:49199775 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57882 PF12171 zf-C2H2_jaz 6.90E-05 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00967 K25870 - jre:109012370 539.265