Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g01003 ATGAAGAAGCTGTCTCCTTTCGATTTGGATACCACCCATTTGGGCTCCGGTGCAGATGTGATCAAATCGAATTCTAAGCCTATGCGGTTACGATCACTGAAGAGTATTTACTTTGTCTTGTTTAAAGCAAAAATTAACGCGTTGCTTCCTTTTGGTCCTCTGGCTATATTGCTCCATTATTTGACTGGGAAACATGGATGGGTCTTCTTTTTCACCTTAGTGGGCATCATACCTTTGGCCGAGCGACTTGGCTATGCAACCGAACAGCTCTCATCTTATACTGGACCTACAGTTGGGGGTCTTTTAAATGCTACATTTGGAAATGCAACAGAATTGATCATTGCTTTCTATGCATTAAAGAAAGGGATGATTAGGGTTGTTCAGCAATCTTTGTTGGGATCAATCTTGTCAAATATGCTTTTGGTGCTTGGTTGTGCCTTCTTCGTTGGTGGAGTTCATTGCAAGAAGATCCAGGTTTTCAATAAGGCAGCTGCAATCGTGAACTCCGGATTGCTGTTGATGGCTGTCATGGGGATATTGCTTCCTGCCGTGCTTCATTTCACGCATACAGAGGTGCATTTTGGGGAGTCAGAATTAGCTCTGTCAAGATTCAGTAGCTTTGTCATGCTAATAGCATACGCCAGCTACCTTTTCTTTCAATTCAAAAGCCAACGCAATCACTATGGTCCAATTGAGGCAGGTGAAGAGAATGGTTCGAGTTCACATGAAGAGGATGCTCCTGAGATAACTAGTTGGGAAGCAATTGGGTGGCTTGCTATTTTGACTGTCTGGATATCTATCTTATCCGGATACTTCGTTGATGCCATCAAGGGCGCATCTGAGTCGTTAAATGTCCCAGTGTCTTTCATCAGTGTCATTTTGCTTCCACTTGTTGGAAATGCCGCAGAACATGCAAGCGCCATCATGTTTGCTGTTAAAGATAAGCTTGATATTAGCCTTGGAGTTGCAATCGGATCGTCAACGCAAATATCAATGTTTGTTATTCCTTTCTGTGTGGTTGTCGGGTGGTTCATGGGCATACCGATGGACTTAAATTTTCAACTTTTTGAGACTGCCACTCTGTTTATCGCAGTGATTGTAGTCGCGTTTATGCTACAGGAAGGTTCATCAAGCTATTTCAAGGGATTGATGCTTATACTGTGCTATGTAATAGTAGGCGCCAGTTTTTTCTTCCACGTTGACTCTTCGAGCGACGACGATTAA 1224 42.97 MKKLSPFDLDTTHLGSGADVIKSNSKPMRLRSLKSIYFVLFKAKINALLPFGPLAILLHYLTGKHGWVFFFTLVGIIPLAERLGYATEQLSSYTGPTVGGLLNATFGNATELIIAFYALKKGMIRVVQQSLLGSILSNMLLVLGCAFFVGGVHCKKIQVFNKAAAIVNSGLLLMAVMGILLPAVLHFTHTEVHFGESELALSRFSSFVMLIAYASYLFFQFKSQRNHYGPIEAGEENGSSSHEEDAPEITSWEAIGWLAILTVWISILSGYFVDAIKGASESLNVPVSFISVILLPLVGNAAEHASAIMFAVKDKLDISLGVAIGSSTQISMFVIPFCVVVGWFMGIPMDLNFQLFETATLFIAVIVVAFMLQEGSSSYFKGLMLILCYVIVGASFFFHVDSSSDDD 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 49521718 49524601 - Bma030142.2 Bma09g01003 89049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g01003 407 Gene3D - 242 396 IPR044880 -
Bma09g01003 407 Gene3D - 96 232 IPR044880 -
Bma09g01003 407 TIGRFAM caca2: calcium/proton exchanger 39 397 - -
Bma09g01003 407 TIGRFAM cax: calcium/proton exchanger 48 397 IPR004798 GO:0006816|GO:0015369
Bma09g01003 407 Pfam Sodium/calcium exchanger protein 67 221 IPR004837 GO:0016021|GO:0055085
Bma09g01003 407 Pfam Sodium/calcium exchanger protein 255 392 IPR004837 GO:0016021|GO:0055085
Bma09g01003 407 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 29 405 IPR004713 GO:0006812|GO:0008324|GO:0016021
Bma09g01003 407 PANTHER VACUOLAR CATION/PROTON EXCHANGER 29 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01269 Bma-Chr2:54712794 Bma09g01003 Bma-Chr9:49521718 0 dispersed
Bma09g01003 Bma-Chr9:49521718 Bma14g00662 Bma-Chr14:7159398 6.17E-159 dispersed
Bma09g01003 Bma-Chr9:49521718 Bma12g00897 Bma-Chr12:40332592 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g01003 K07300 - mnt:21384959 608.986