Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g01011 ATGCCTTCTGTGTACGGTGCTCGTTTGACCACCTTTGAAGACTCTGAGAAGGAACGGGAGTATGGATATGTCCGTAAGGTGTCTGGCCCCGTCGTGGTTGCAGATGGCATGGCAGGTGCCGCCATGTATGAATTGGTTCGAGTTGGTCACGATAATCTGATTGGTGAAATTATTCGACTGGAAGGAGATTCTGCTACTATCCAAGTTTACGAGGAAACAGCTGGGTTGATGGTGAATGACCCGGTTCTGCGGACGCATAAGCCTTTGTCGGTGGAATTGGGACCTGGAATACTGGGAAACATATTTGATGGAATTCAGAGACCTCTGAAAACTATTGCGAAAATATCTGGAGATGTCTACATACCTCGTGGTGTATCAGTGCCAGCACTTGACAAAGATATTCTTTGGGATTTTCAGCCAAAAAAACTTGGTGAAGGTGATCTTTTGACTGGTGGAGATTTGTATGCTACTGTCTTTGAGAATAGTTTAATGCAGCACCATATTGCGCTTCCTCCTAGTTCAATGGGAAAAATTACTTACATTGCTCCAGAAGGTCAATATTCATTGAAGGATACAGTGTTGGAGCTGGAGTTTCAAGGTGTTAAAAAGCAATTTACCATGCTTCAGACATGGCCTGTACGTACACCTAGGCCGGTTGCATCAAAACTTGCTGCTGATACCCCTCTACTTACTGGTCAGCGTGTTCTTGATGCTCTTTTTCCTTCTGTTCTTGGTGGAACTTGTGCGATACCTGGAGCATTTGGTTGTGGAAAAACTGTCATTAGTCAGGCTCTTTCTAAGTACTCAAATTCCGACACTGTGGTTTATGTTGGTTGTGGAGAGCGAGGAAATGAAATGGCGGAGGTTCTTATGGATTTTCCGCAATTGACAATGACATTGCCTGACGGTCGTGAAGAATCTGTCATGAAACGCACTACTCTTGTGGCCAACACTTCTAACATGCCTGTGGCTGCCCGTGAGGCTTCAATATATACAGGAATCACCATTGCTGAATACTTCAGAGACATGGGATACAATGTGAGTATGATGGCAGATTCTACATCGCGTTGGGCAGAAGCACTGCGTGAGATATCTGGACGTCTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCTTATCTTGCGGCACGTCTAGCTTCTTTCTACGAACGTGCAGGAAAAGTAAAATGTCTTGGAGGACCTGAACGTAATGGTAGTGTTACAATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTTTCTGATCCTGTAACTTCTGCTACCCTCAGTATTGTACAGGTTTTCTGGGGACTAGACAAAAAGCTTGCTCAAAGAAAACACTTCCCATCTGTAAACTGGCTTATTTCTTACTCAAAATACTCAACTGCATTGGAATCCTTCTATGAGCAGTTTGACCAAGATTTTATTAACATCAGGACAAAGGCTCGTGAGGTGCTACAAAGAGAAGATGACCTTAATGAGATTGTTCAACTTGTTGGAAAAGATGCATTAGCTGAAGGAGATAAAATTACCCTCGAGACTGCAAAACTTCTGAGAGAAGACTATCTAGCTCAGAATGCATTCACTCCATATGATAAATTCTGCCCATTTTATAAGTCTGTTTGGATGATGCGCAACATCATTCATTTCTACAATTTGGCCAATCAGGCTGTAGAGAGAGGAGCAGGTATGGATGGTCAGAAGATAACATACACTCTGATCAAGCACCGATTAGGAGATCTTTTTTATCGGCTAGTGTCCCAAAAATTTGAGGACCCAGCGGAAGGAGAAGAAGCGCTTGTTTCAAAATTTAAGAAGCTGCATGAAGACCTGACAAATGGTTTCCGTGCCCTTGAGGATGAAACTCGGTGA 1872 43.59 MPSVYGARLTTFEDSEKEREYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKISGDVYIPRGVSVPALDKDILWDFQPKKLGEGDLLTGGDLYATVFENSLMQHHIALPPSSMGKITYIAPEGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERNGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDQDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEEALVSKFKKLHEDLTNGFRALEDETR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 49562592 49570486 - Bma030149.1 Bma09g01011 89057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g01011 623 Gene3D - 91 457 IPR027417 -
Bma09g01011 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 462 IPR027417 -
Bma09g01011 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Bma09g01011 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524
Bma09g01011 623 Gene3D - 459 612 IPR024034 -
Bma09g01011 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Bma09g01011 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 - -
Bma09g01011 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524
Bma09g01011 623 Gene3D - 134 205 - -
Bma09g01011 623 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 20 611 IPR005725 GO:0033180|GO:0046961|GO:1902600
Bma09g01011 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Bma09g01011 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034|GO:0046961
Bma09g01011 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Bma09g01011 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Bma09g01011 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Bma09g01011 623 CDD V_A-ATPase_A 88 460 - -
Bma09g01011 623 Gene3D - 20 89 IPR023366 -
Bma09g01011 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 IPR022878 GO:0046034|GO:0046961
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma09g01011 Bma15g00289 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00447 Bma-Chr1:3712767 Bma09g01011 Bma-Chr9:49562592 8.46E-24 dispersed
Bma08g00610 Bma-Chr8:38513192 Bma09g01011 Bma-Chr9:49562592 5.54E-22 dispersed
Bma09g01011 Bma-Chr9:49562592 Bma15g00060 Bma-Chr15:740166 8.63E-28 dispersed
Bma15g00289 Bma-Chr15:2842200 Bma09g01011 Bma-Chr9:49562592 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g01011 K02145 - vvi:100261512 1195.65