Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00004 ATGAACGACCTTCTATCGGATTCATTTGAGATCCCCCAGGGTCAGCCTTCTAGAAGTGGAGACATTGAGCTAGGATTAAACCCTCCAATGAATTCAGGAGAGCTTGGCTTGGAGAATTTCTTTAAAAAGGTTCAGGAAATTGAGAAACAGAATGAGACACTGGATAAGCTGCTTAAAAAGCTCCAGATTGCCAATGAAGAGTCGAAAGCGGTAACTAAGGCTCCTGCTATGAAAGCGATCAAGCAGCGGATGGAAAAGGACGTCGATGAAGTTGGGAAAATTGCACGTACGATAAAGATAAAAATTGAAGAACTTGACAGAGAGAATTTGGCAAATAGGCAGAAACCAGGTTGCGGGAAAGGAACAGGAGTAGATAGATCAAGATCTGCAACAACTCTTGCCTTGAAAAAGAAGTTCAAAGACAAGCTGGCTGAATTTCAGATTTTGCGGGAAACCATTCATCAAGAATACAGGGAAGTCGTTGAGAGACGTGTTTTCACAGTGACGGGCACAAGAGCTGATGAAGAGACAATTGACAAATTAATTGAGACTGGAGATAGTGAACAAATTTTCCAAAAGGCGATTCAAGAACAAGGACGAGGGCAGATAAAAGATACCCTGGCAGAAATTCAGGAGCGTCATAGTGCAGTTAGAGACTTGGAAAGAAAGCTCCTCGAGTTACAACAGGTATTTCTGGATATGGCAGTATTAGTGGATGCACAAGGGGATATGCTTGACAATATCGAAACACATGTATCAAATGCAGTAGATCATGTACAGCAAGGAAATACGGCGCTCCAAAAGGCCAAGAAATTACAAAGGAATTCCAGGAAATGGATGTGCATTGCCATCATCATACTTCTTATAATTGTCATTGTCATTATTCTGGGTGTCCTCAAGCCCTGGGACAAGAAGAGTAAGTAA 924 41.88 MNDLLSDSFEIPQGQPSRSGDIELGLNPPMNSGELGLENFFKKVQEIEKQNETLDKLLKKLQIANEESKAVTKAPAMKAIKQRMEKDVDEVGKIARTIKIKIEELDRENLANRQKPGCGKGTGVDRSRSATTLALKKKFKDKLAEFQILRETIHQEYREVVERRVFTVTGTRADEETIDKLIETGDSEQIFQKAIQEQGRGQIKDTLAEIQERHSAVRDLERKLLELQQVFLDMAVLVDAQGDMLDNIETHVSNAVDHVQQGNTALQKAKKLQRNSRKWMCIAIIILLIIVIVIILGVLKPWDKKSK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 154588 183070 + Bma003626.1 Bma10g00004 89067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00004 307 SUPERFAMILY t-snare proteins 36 262 IPR010989 GO:0016020|GO:0016192
Bma10g00004 307 Pfam SNARE domain 243 295 IPR000727 -
Bma10g00004 307 MobiDBLite consensus disorder prediction 1 15 - -
Bma10g00004 307 CDD SNARE_syntaxin1-like 206 268 - -
Bma10g00004 307 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Bma10g00004 307 PANTHER - 3 299 - -
Bma10g00004 307 Gene3D - 35 161 - -
Bma10g00004 307 CDD SynN 37 194 IPR006011 GO:0016020
Bma10g00004 307 PANTHER SYNTAXIN 3 299 IPR045242 -
Bma10g00004 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Bma10g00004 307 Gene3D - 197 299 - -
Bma10g00004 307 MobiDBLite consensus disorder prediction 1 24 - -
Bma10g00004 307 SMART SynN_4 32 158 IPR006011 GO:0016020
Bma10g00004 307 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bma10g00004 307 SMART tSNARE_6 202 269 IPR000727 -
Bma10g00004 307 Coils Coil 37 74 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00004 Bma-Chr10:154588 Bma11g00374 Bma-Chr11:4077034 2.96E-93 dispersed
Bma10g00004 Bma-Chr10:154588 Bma07g00353 Bma-Chr7:4463222 3.00E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00004 K08486 - cpap:110814967 490.73