Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00017 ATGGCTGCCGTAGTTCTTCCACCAACTTTAGAAGGCACTGCCCAGCAACCTCCCCTTTTTGATGGCACTACCAGATTGTATACTTCGTACGTATGCCCTTACGCACAACGTGTGTGGATCATCCGCAATTACAAGGGATTACAAGATGAAATCAAATTAGTTCCTCTAAACCTTCAAGACAGACCTGCCTGGTATAAGGAGAAAGTCTACCCTGTAAACAAGGTTCCAGCTTTGGAACACAATGGAAAGGTTATTGGAGAAAGTCTTGATTTGATTAAATATATCAATAGCAACTTCGAAGGGGTTTCTCTTTGGCCCGAAGATCCCGCTAAAGTAAAGTTCGCTGAAGAGTTGTTATCATACTCTGATACATTCAACATGGCAGTGTTTGGTTTACTAAAAACAGGCCCAGCTAATGGAACTGGTCAATTTGATTACTTGGAGGATGCTTTGGGTAAATTTGATGATGGGCCATTCTTCCTTGGAGAAATCAGTTTGGTGGATATTGCCTACATACCCTTTGTTGAAAGGTTCAAAATTTATTTAGCAGAGGTTTGGAAGCACGATATAACCGAGGGAAGGCCTAAACTAGCTTTATGGATTGAGGCAATGGACAAGATCGATGCATATGCGCAAACAAAATGCGATCCCAAAGATTTTCTTGAAGCATACAAGAAGCGTTTGTCGGCTCAGTAG 696 41.81 MAAVVLPPTLEGTAQQPPLFDGTTRLYTSYVCPYAQRVWIIRNYKGLQDEIKLVPLNLQDRPAWYKEKVYPVNKVPALEHNGKVIGESLDLIKYINSNFEGVSLWPEDPAKVKFAEELLSYSDTFNMAVFGLLKTGPANGTGQFDYLEDALGKFDDGPFFLGEISLVDIAYIPFVERFKIYLAEVWKHDITEGRPKLALWIEAMDKIDAYAQTKCDPKDFLEAYKKRLSAQ 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 282462 284215 + Bma003640.1 Bma10g00017 89080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00017 231 SUPERFAMILY Thioredoxin-like 16 103 IPR036249 -
Bma10g00017 231 CDD GST_C_Lambda 108 225 - -
Bma10g00017 231 SFLD Main (cytGST) 25 205 - -
Bma10g00017 231 PANTHER GLUTATHIONE S-TRANSFERASE L1 4 229 IPR044629 GO:0004364
Bma10g00017 231 Pfam Glutathione S-transferase, C-terminal domain 144 203 - -
Bma10g00017 231 SFLD Glutathione Transferase (cytosolic) 25 205 IPR040079 -
Bma10g00017 231 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 22 103 IPR004045 -
Bma10g00017 231 PANTHER GLUTATHIONE S-TRANSFERASE L2, CHLOROPLASTIC 4 229 - -
Bma10g00017 231 Gene3D - 101 231 - -
Bma10g00017 231 SUPERFAMILY GST C-terminal domain-like 101 228 IPR036282 -
Bma10g00017 231 Gene3D Glutaredoxin 1 100 - -
Bma10g00017 231 Pfam Glutathione S-transferase, N-terminal domain 26 101 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00017 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - pvy:116127701 345.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00017 Bma-Chr10:282462 Bma13g00910 Bma-Chr13:39481538 7.30E-09 dispersed
Bma10g00017 Bma-Chr10:282462 Bma06g00175 Bma-Chr6:2208313 2.03E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma10g01002 . 1 205 Glutathione S-transferase Gene Family AT2G02930 50.2 1.1e-52 203.4
Bma13g00392 . 1 220 Glutathione S-transferase Gene Family AT2G47730 51.1 1.2e-56 216.9
Bma10g01002 . 1 208 Glutathione S-transferase Gene Family AT2G47730 51.9 1.6e-56 216.5
Bma14g01123 . 1 212 Glutathione S-transferase Gene Family AT3G03190 59.4 5.7e-73 270.8
Bma14g01123 . 1 214 Glutathione S-transferase Gene Family AT5G17220 59.8 2.0e-73 272.3
Bma01g01846 . 3 216 Glutathione S-transferase Gene Family AT3G09270 55.3 4.0e-69 258.1
Bma01g01843 . 3 189 Glutathione S-transferase Gene Family AT3G09270 57.4 6.4e-59 224.2
Bma13g00909 . 1 234 Glutathione S-transferase Gene Family AT1G78380 63.7 4.6e-86 314.3
Bma13g00910 . 1 209 Glutathione S-transferase Gene Family AT1G78380 65.1 1.8e-82 302.4
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78380 63.6 2.0e-81 298.9
Bma13g00909 . 1 232 Glutathione S-transferase Gene Family AT1G78370 58.6 9.2e-79 290.0
Bma13g00910 . 1 212 Glutathione S-transferase Gene Family AT1G78370 61.3 3.9e-77 284.6
Bma10g00468 . 1 214 Glutathione S-transferase Gene Family AT1G78370 60.2 1.9e-76 282.3
Bma13g00909 . 1 234 Glutathione S-transferase Gene Family AT1G78340 59.0 9.9e-81 296.6
Bma13g00910 . 1 211 Glutathione S-transferase Gene Family AT1G78340 63.0 2.9e-80 295.0
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78340 60.7 4.6e-78 287.7
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78320 51.4 1.0e-57 219.9
Bma13g00910 . 1 205 Glutathione S-transferase Gene Family AT1G78320 53.2 2.3e-57 218.8
Bma13g00909 . 1 237 Glutathione S-transferase Gene Family AT1G17180 60.8 4.6e-86 314.3
Bma10g00468 . 1 217 Glutathione S-transferase Gene Family AT1G17180 63.5 4.3e-84 307.8
Bma13g00910 . 1 209 Glutathione S-transferase Gene Family AT1G17180 63.6 8.2e-83 303.5
Bma13g00909 . 3 235 Glutathione S-transferase Gene Family AT1G17190 54.5 2.4e-74 275.4
Bma13g00910 . 3 209 Glutathione S-transferase Gene Family AT1G17190 57.5 3.2e-71 265.0
Bma10g00468 . 3 215 Glutathione S-transferase Gene Family AT1G17190 55.8 4.2e-71 264.6
Bma13g00910 . 3 215 Glutathione S-transferase Gene Family AT3G43800 51.6 2.4e-61 232.3
Bma13g00909 . 4 237 Glutathione S-transferase Gene Family AT1G53680 54.0 1.8e-69 259.2
Bma13g00910 . 4 216 Glutathione S-transferase Gene Family AT1G53680 57.8 6.8e-69 257.3
Bma10g00468 . 4 217 Glutathione S-transferase Gene Family AT1G53680 53.2 3.7e-67 251.5
Bma14g01714 . 53 220 Glutathione S-transferase Gene Family AT2G02390 58.3 6.7e-57 217.2
Bma06g01222 . 58 224 Glutathione S-transferase Gene Family AT2G02390 53.3 4.4e-48 188.0
Bma14g01714 . 11 223 Glutathione S-transferase Gene Family AT2G02380 61.0 5.9e-73 270.8
Bma06g01222 . 15 223 Glutathione S-transferase Gene Family AT2G02380 54.1 1.0e-61 233.4
Bma05g00815 . 1 244 Glutathione S-transferase Gene Family AT5G41210 68.9 4.9e-97 350.9
Bma05g00815 . 1 250 Glutathione S-transferase Gene Family AT5G41240 66.8 5.5e-94 342.0
Bma10g00017 . 10 226 Glutathione S-transferase Gene Family AT5G02780 64.8 2.9e-78 288.5
Bma10g00017 . 8 231 Glutathione S-transferase Gene Family AT3G55040 58.2 8.3e-75 277.3
Bma10g00017 . 7 227 Glutathione S-transferase Gene Family AT5G02790 66.2 7.9e-84 307.0
Bma03g00309 . 1 237 Glutathione S-transferase Gene Family AT1G19570 60.5 1.8e-79 292.4
Bma01g01148 . 64 271 Glutathione S-transferase Gene Family AT1G19570 57.9 4.5e-70 261.2
Bma08g01128 . 1 241 Glutathione S-transferase Gene Family AT1G19570 51.7 4.2e-68 254.6
Bma03g00309 . 1 238 Glutathione S-transferase Gene Family AT1G75270 61.5 9.6e-81 296.6
Bma08g01128 . 1 209 Glutathione S-transferase Gene Family AT1G75270 63.8 7.4e-73 270.4
Bma01g01148 . 64 271 Glutathione S-transferase Gene Family AT1G75270 57.4 9.0e-71 263.5
Bma01g01148 . 53 273 Glutathione S-transferase Gene Family AT5G16710 71.9 1.4e-97 352.8
Bma08g01128 . 3 211 Glutathione S-transferase Gene Family AT5G16710 52.6 3.9e-60 228.4
Bma01g02091 . 1 267 Glutathione S-transferase Gene Family AT1G77290 66.8 1.0e-100 363.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000664 2 7 0 1 1 2 3 2 3 3 1 3 2 4 4 3 3 4 2 2 4 3 3 4 5 3 2 8 6 4 94
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00017 Bma_Chr10 FPKM 49.616295 51.61639 77.025131 76.672958 100.067726 100.614311 104.385628 94.233856 92.572716 93.57859