Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00020 ATGGCGAGGAAAGGAAATTGGTTTTCCACTGTAAAGAAAGCTCTCAGCCCCGAGTCCAAAGAGAAGAAACATCAGTCGAAGAAGAAATGGTTTGGGAAACAGAAACAATCCAATCCAGAATCTGCATTGGAAGATGTCATCACGCTCCCTCCTCTCCCGCCAGAAGAGTTGAAATCAAGCTGTGCTGTCAATGAAGAGAGTAATTGTGGTGGCTCCATTGAAGTTCCTACTGCTGGGTCGGTATCAACCTCAGTTGCTGCATCTGAGGATGTTCCCGACATTATCCAACTTCCCCCGAAAACTCAATTTACCGGAAAATCAAGGGAAGAAGTGGCCGCAATCAAGATTCAAACAGCATTTCGAGGATTTTTGGCAAGAAGGGCATTGCGGGCTTTAAGGGGGTTGGTGCGGCTTAAAAAACTCATGGAGGGTTCTGTTGTGAAACGTCAAGCTGCAAATACTCTCCACTGCATGCAAACTCTTGCCCGAGTACAGTCTCAAATCCGTTTTAGGAGGATCAGGATGCTGGAGGAGAATCAAGCTCTTCAAAAACAACTTCTGCAGAAACATGCTAAAGAGCTTGAGAATTTGCAGATGGGGGAGGAATGGGATGACAGCTTCCAATCAAAGGAGCAAATTGAAGCGAACCTACTAAGCAAATATGAGGCAGCTATGAGAAGGGAGAGAGCGATGGCTTATTCGTTCTCTCATCAGGTGATTACTCTCTCCTGGTTATTCTTAGGCTTTGACTCACGTATAGTTGATAATGTCTTTATTAACAGCAAAGCTAAGAAACGCCCCAACAGGGTGTCTGAACTGGAGTCCCAGCTTTCTCAGCTCAAAAAGGAACTGAAGGCGGCGAATGACCAACTCATCTCATCTGAATCATGTCAGAGGAAGATTCAGGAAGAGGCTGAAGAAGCAAAGAAGGAGCTTTTAGCCACGAGTAAATTGCTCGAGGAATCTCAGAAGCAGATGCTCGAGCTTTCTGCTTCTGAGAAAAATCACTTTCAGGAGGTTCGTGAATTCCCTCAGGGTGGAGATGAAGCATGGCAGTCAGAGCTTGAAGCTATCAGGAAACAACATTCAAGTGATTCTATTGCCTTGGCCTCTGCTACTAATGAAGTTCAAAAGCTCAAGGCTCAACTTGAGGCTGTTTCTCAATTTGAAGCCACAGAGAGTAAGCATGCTGAATCTGCGCGTGCTGAGATCCAGGGCTTGAGAATAGAACTTGCTGACACTCTCTCTTTAGTTGAGAAACTGAAAGATGAACTCAGTAAGGGAAAGGAATCTGAATCTCAGGCTTTAGATGTTTTAAGAAGGACACAGATTCAATTTGAAACAGTGAATGCGACTGTAGAAATGCTCCAAACAGATGGACTCAAAGCCATGGAGGCTTATAACTCCTTGTCTTTGGAGTTAGAGCAATCTAAAGCCCAAGTTAGATTATTGGAGGAACTTCTTAATCAATTTCAGGCTGATTTGCCCAATGGTGGCAGCAAAAGTTTGGAGGATCCTTCTCTCGTGGAAAATGGAGGAAATGAAGAAATGAAGCTAAAACCTGATCAAAACTCTCTGAGATTTGAGGTGCTTCAGTTGAAATCTGCACTAGAGGCAGCCGAAACAAAGTACCAGGAAGAGTGTGTTCAAAGGACATTGCAGATGAGGAGTGCTTATGAACAAGTAGAACTGACAAAATCAGAAGCAGATCAGAAACAGCTTGAATTAGAAGCCGAACTGAAGAAAACCAAGGTTCAAATTGATCAATTGAAAACACAATTGATAAACAAGGAAACTCACTTGGAGAGACTTTTGGAGGAGAACAAGGAGCTCAACTTAAAGAGTAACAGAAACTTACCCGGTGAAGGAGAAGAATCTCAACTTGCAGTGGATCTGAAGAAGTCAGAAGCTCATGTGGTTCAGTTGAAAGAGAAACTGTCTGATAAGGAATTGGAATTACTGTGCATAACTGAGGAGAATGAAATGCTGAAGAGGGACATTAACAGGAAGGAAACAGAAAACACGAAAACAAATGAAATGGCCGAAGCAGCCAAGGCTGGAGAAAGAGAGGCTTTGATGAAACTTAGCTATGCTACTGAGGAGGGTGATAAAAGTAGCAGAAAAGCAGCTAGAGCTACCGAGCAGCTTGATGCAGCACAGGCTGCTAATTCAGAAATGGAGGCTGAGTTGAGGAGGCTAAAAGTACAAGCAGACCAGTGGAGAAAGGCGGCTGAGGCAGCTGCTTCAATGCTTTCACCTGGAAACAACGGCAAGTATATAGAGAGAACTGTTTCTCTAGATAGCAATTATCCGATGGGCTCGCCATATTTAGAAGACCCGGATGATGATTCGCCAAAGAAGAAGAATGGTAATATGTTGAAGAAGATTGGAGTTTTATGGAAAAAGGGCCAGAAGTAA 2418 43.63 MARKGNWFSTVKKALSPESKEKKHQSKKKWFGKQKQSNPESALEDVITLPPLPPEELKSSCAVNEESNCGGSIEVPTAGSVSTSVAASEDVPDIIQLPPKTQFTGKSREEVAAIKIQTAFRGFLARRALRALRGLVRLKKLMEGSVVKRQAANTLHCMQTLARVQSQIRFRRIRMLEENQALQKQLLQKHAKELENLQMGEEWDDSFQSKEQIEANLLSKYEAAMRRERAMAYSFSHQVITLSWLFLGFDSRIVDNVFINSKAKKRPNRVSELESQLSQLKKELKAANDQLISSESCQRKIQEEAEEAKKELLATSKLLEESQKQMLELSASEKNHFQEVREFPQGGDEAWQSELEAIRKQHSSDSIALASATNEVQKLKAQLEAVSQFEATESKHAESARAEIQGLRIELADTLSLVEKLKDELSKGKESESQALDVLRRTQIQFETVNATVEMLQTDGLKAMEAYNSLSLELEQSKAQVRLLEELLNQFQADLPNGGSKSLEDPSLVENGGNEEMKLKPDQNSLRFEVLQLKSALEAAETKYQEECVQRTLQMRSAYEQVELTKSEADQKQLELEAELKKTKVQIDQLKTQLINKETHLERLLEENKELNLKSNRNLPGEGEESQLAVDLKKSEAHVVQLKEKLSDKELELLCITEENEMLKRDINRKETENTKTNEMAEAAKAGEREALMKLSYATEEGDKSSRKAARATEQLDAAQAANSEMEAELRRLKVQADQWRKAAEAAASMLSPGNNGKYIERTVSLDSNYPMGSPYLEDPDDDSPKKKNGNMLKKIGVLWKKGQK 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 311338 317497 - Bma003643.1 Bma10g00020 89083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00020 805 PANTHER INTERACTOR OF CONSTITUTIVE ACTIVE ROPS 2, CHLOROPLASTIC-RELATED 263 805 IPR029688 -
Bma10g00020 805 Coils Coil 270 290 - -
Bma10g00020 805 MobiDBLite consensus disorder prediction 769 793 - -
Bma10g00020 805 Coils Coil 298 325 - -
Bma10g00020 805 Coils Coil 467 494 - -
Bma10g00020 805 MobiDBLite consensus disorder prediction 1 43 - -
Bma10g00020 805 Pfam IQ calmodulin-binding motif 112 130 IPR000048 GO:0005515
Bma10g00020 805 SMART iq_5 108 130 IPR000048 GO:0005515
Bma10g00020 805 Coils Coil 709 743 - -
Bma10g00020 805 MobiDBLite consensus disorder prediction 699 726 - -
Bma10g00020 805 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
Bma10g00020 805 Coils Coil 559 614 - -
Bma10g00020 805 Coils Coil 369 389 - -
Bma10g00020 805 MobiDBLite consensus disorder prediction 495 518 - -
Bma10g00020 805 Coils Coil 404 424 - -
Bma10g00020 805 Coils Coil 632 680 - -
Bma10g00020 805 PANTHER INTERACTOR OF CONSTITUTIVE ACTIVE ROPS 2, CHLOROPLASTIC 263 805 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00020 - - - vvi:100265405 601.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00330 Bma-Chr6:6805939 Bma10g00020 Bma-Chr10:311338 7.59E-10 dispersed
Bma08g01144 Bma-Chr8:50511458 Bma10g00020 Bma-Chr10:311338 1.36E-41 dispersed
Bma10g00020 Bma-Chr10:311338 Bma01g02209 Bma-Chr1:79004323 1.85E-31 dispersed
Bma15g00843 Bma-Chr15:21264274 Bma10g00020 Bma-Chr10:311338 0 transposed
Bma01g01915 Bma-Chr1:70484959 Bma10g00020 Bma-Chr10:311338 1.63E-83 wgd
Bma10g00020 Bma-Chr10:311338 Bma14g00473 Bma-Chr14:5354312 1.70E-112 wgd
Bma10g00020 Bma-Chr10:311338 Bma04g01643 Bma-Chr4:52333556 9.62E-08 wgd
Bma10g00020 Bma-Chr10:311338 Bma04g00617 Bma-Chr4:5873489 9.86E-113 wgd
Bma10g00020 Bma-Chr10:311338 Bma07g01510 Bma-Chr7:50703802 2.61E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g606 . . . . Bpe04g01589 . . Bma10g00020 Cmo06g00353 . . Cma07g00937 Car03g01126 Car07g00918 . Cpe10g00203 . Bhi03g01672 . . . Hepe04g0914 . . Cla04g00869 Cam04g0841 Cec04g1024 Cco04g1083 Clacu04g0929 Cmu04g0918 Cre01g0429 . . Cone13ag1287 Cone19ag1272 Lsi01g01363 Csa04g01422 Chy08g00816 Cme04g02549 Blo07g01409 Blo09g00550 Bda03g01731 Bda05g01241 . . . . Sed04g1336 . Cmo07g00981 Cma06g00359 . Car06g00308 . . Cpe19g00400 Bhi11g02125 Tan08g1905 Cmetu04g2215 . Hepe05g0240 . . Cla10g01948 Cam10g2014 Cec10g2056 Cco10g2042 Clacu10g2021 Cmu10g2771 Cre10g2162 Lsi03g02046 Csa03g03255 Chy04g02086 Cme08g02328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g01643 . 47 376 IQD Protein Family AT5G03040 57.2 3.0e-87 319.3
Bma10g00020 . 1 238 IQD Protein Family AT5G03040 56.3 1.1e-57 221.1
Bma08g00947 CCT,ECH 1 469 IQD Protein Family AT3G52290 51.2 1.1e-91 334.0
Bma07g01423 BCT,CCT 1 387 IQD Protein Family AT3G22190 58.7 2.0e-98 356.3
Bma14g00379 BCT,CCT 1 391 IQD Protein Family AT3G22190 55.0 5.2e-86 315.1
Bma01g02209 . 1 433 IQD Protein Family AT2G26180 57.3 1.2e-114 410.2
Bma11g01010 . 1 274 IQD Protein Family AT2G33990 52.6 8.6e-63 237.3
Bma10g00484 . 1 133 IQD Protein Family AT3G15050 63.2 6.7e-44 174.5
Bma02g01259 . 247 675 IQD Protein Family AT4G00820 57.3 2.6e-106 382.9
Bma04g00927 . 1 231 IQD Protein Family AT4G00820 57.3 3.6e-52 203.0
Bma02g01259 . 254 675 IQD Protein Family AT1G01110 55.1 1.3e-102 370.5
Bma04g00927 . 1 231 IQD Protein Family AT1G01110 53.1 8.8e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000857 1 13 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 7 6 1 89
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00020 Bma_Chr10 FPKM 16.162432 20.337679 22.076872 23.633944 22.770763 20.177769 24.036568 37.737938 38.45837 44.452705