Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00020 ATGGCGAGGAAAGGAAATTGGTTTTCCACTGTAAAGAAAGCTCTCAGCCCCGAGTCCAAAGAGAAGAAACATCAGTCGAAGAAGAAATGGTTTGGGAAACAGAAACAATCCAATCCAGAATCTGCATTGGAAGATGTCATCACGCTCCCTCCTCTCCCGCCAGAAGAGTTGAAATCAAGCTGTGCTGTCAATGAAGAGAGTAATTGTGGTGGCTCCATTGAAGTTCCTACTGCTGGGTCGGTATCAACCTCAGTTGCTGCATCTGAGGATGTTCCCGACATTATCCAACTTCCCCCGAAAACTCAATTTACCGGAAAATCAAGGGAAGAAGTGGCCGCAATCAAGATTCAAACAGCATTTCGAGGATTTTTGGCAAGAAGGGCATTGCGGGCTTTAAGGGGGTTGGTGCGGCTTAAAAAACTCATGGAGGGTTCTGTTGTGAAACGTCAAGCTGCAAATACTCTCCACTGCATGCAAACTCTTGCCCGAGTACAGTCTCAAATCCGTTTTAGGAGGATCAGGATGCTGGAGGAGAATCAAGCTCTTCAAAAACAACTTCTGCAGAAACATGCTAAAGAGCTTGAGAATTTGCAGATGGGGGAGGAATGGGATGACAGCTTCCAATCAAAGGAGCAAATTGAAGCGAACCTACTAAGCAAATATGAGGCAGCTATGAGAAGGGAGAGAGCGATGGCTTATTCGTTCTCTCATCAGGTGATTACTCTCTCCTGGTTATTCTTAGGCTTTGACTCACGTATAGTTGATAATGTCTTTATTAACAGCAAAGCTAAGAAACGCCCCAACAGGGTGTCTGAACTGGAGTCCCAGCTTTCTCAGCTCAAAAAGGAACTGAAGGCGGCGAATGACCAACTCATCTCATCTGAATCATGTCAGAGGAAGATTCAGGAAGAGGCTGAAGAAGCAAAGAAGGAGCTTTTAGCCACGAGTAAATTGCTCGAGGAATCTCAGAAGCAGATGCTCGAGCTTTCTGCTTCTGAGAAAAATCACTTTCAGGAGGTTCGTGAATTCCCTCAGGGTGGAGATGAAGCATGGCAGTCAGAGCTTGAAGCTATCAGGAAACAACATTCAAGTGATTCTATTGCCTTGGCCTCTGCTACTAATGAAGTTCAAAAGCTCAAGGCTCAACTTGAGGCTGTTTCTCAATTTGAAGCCACAGAGAGTAAGCATGCTGAATCTGCGCGTGCTGAGATCCAGGGCTTGAGAATAGAACTTGCTGACACTCTCTCTTTAGTTGAGAAACTGAAAGATGAACTCAGTAAGGGAAAGGAATCTGAATCTCAGGCTTTAGATGTTTTAAGAAGGACACAGATTCAATTTGAAACAGTGAATGCGACTGTAGAAATGCTCCAAACAGATGGACTCAAAGCCATGGAGGCTTATAACTCCTTGTCTTTGGAGTTAGAGCAATCTAAAGCCCAAGTTAGATTATTGGAGGAACTTCTTAATCAATTTCAGGCTGATTTGCCCAATGGTGGCAGCAAAAGTTTGGAGGATCCTTCTCTCGTGGAAAATGGAGGAAATGAAGAAATGAAGCTAAAACCTGATCAAAACTCTCTGAGATTTGAGGTGCTTCAGTTGAAATCTGCACTAGAGGCAGCCGAAACAAAGTACCAGGAAGAGTGTGTTCAAAGGACATTGCAGATGAGGAGTGCTTATGAACAAGTAGAACTGACAAAATCAGAAGCAGATCAGAAACAGCTTGAATTAGAAGCCGAACTGAAGAAAACCAAGGTTCAAATTGATCAATTGAAAACACAATTGATAAACAAGGAAACTCACTTGGAGAGACTTTTGGAGGAGAACAAGGAGCTCAACTTAAAGAGTAACAGAAACTTACCCGGTGAAGGAGAAGAATCTCAACTTGCAGTGGATCTGAAGAAGTCAGAAGCTCATGTGGTTCAGTTGAAAGAGAAACTGTCTGATAAGGAATTGGAATTACTGTGCATAACTGAGGAGAATGAAATGCTGAAGAGGGACATTAACAGGAAGGAAACAGAAAACACGAAAACAAATGAAATGGCCGAAGCAGCCAAGGCTGGAGAAAGAGAGGCTTTGATGAAACTTAGCTATGCTACTGAGGAGGGTGATAAAAGTAGCAGAAAAGCAGCTAGAGCTACCGAGCAGCTTGATGCAGCACAGGCTGCTAATTCAGAAATGGAGGCTGAGTTGAGGAGGCTAAAAGTACAAGCAGACCAGTGGAGAAAGGCGGCTGAGGCAGCTGCTTCAATGCTTTCACCTGGAAACAACGGCAAGTATATAGAGAGAACTGTTTCTCTAGATAGCAATTATCCGATGGGCTCGCCATATTTAGAAGACCCGGATGATGATTCGCCAAAGAAGAAGAATGGTAATATGTTGAAGAAGATTGGAGTTTTATGGAAAAAGGGCCAGAAGTAA 2418 43.63 MARKGNWFSTVKKALSPESKEKKHQSKKKWFGKQKQSNPESALEDVITLPPLPPEELKSSCAVNEESNCGGSIEVPTAGSVSTSVAASEDVPDIIQLPPKTQFTGKSREEVAAIKIQTAFRGFLARRALRALRGLVRLKKLMEGSVVKRQAANTLHCMQTLARVQSQIRFRRIRMLEENQALQKQLLQKHAKELENLQMGEEWDDSFQSKEQIEANLLSKYEAAMRRERAMAYSFSHQVITLSWLFLGFDSRIVDNVFINSKAKKRPNRVSELESQLSQLKKELKAANDQLISSESCQRKIQEEAEEAKKELLATSKLLEESQKQMLELSASEKNHFQEVREFPQGGDEAWQSELEAIRKQHSSDSIALASATNEVQKLKAQLEAVSQFEATESKHAESARAEIQGLRIELADTLSLVEKLKDELSKGKESESQALDVLRRTQIQFETVNATVEMLQTDGLKAMEAYNSLSLELEQSKAQVRLLEELLNQFQADLPNGGSKSLEDPSLVENGGNEEMKLKPDQNSLRFEVLQLKSALEAAETKYQEECVQRTLQMRSAYEQVELTKSEADQKQLELEAELKKTKVQIDQLKTQLINKETHLERLLEENKELNLKSNRNLPGEGEESQLAVDLKKSEAHVVQLKEKLSDKELELLCITEENEMLKRDINRKETENTKTNEMAEAAKAGEREALMKLSYATEEGDKSSRKAARATEQLDAAQAANSEMEAELRRLKVQADQWRKAAEAAASMLSPGNNGKYIERTVSLDSNYPMGSPYLEDPDDDSPKKKNGNMLKKIGVLWKKGQK 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 311338 317497 - Bma003643.1 Bma10g00020 89083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00020 805 PANTHER INTERACTOR OF CONSTITUTIVE ACTIVE ROPS 2, CHLOROPLASTIC-RELATED 263 805 IPR029688 -
Bma10g00020 805 Coils Coil 270 290 - -
Bma10g00020 805 MobiDBLite consensus disorder prediction 769 793 - -
Bma10g00020 805 Coils Coil 298 325 - -
Bma10g00020 805 Coils Coil 467 494 - -
Bma10g00020 805 MobiDBLite consensus disorder prediction 1 43 - -
Bma10g00020 805 Pfam IQ calmodulin-binding motif 112 130 IPR000048 GO:0005515
Bma10g00020 805 SMART iq_5 108 130 IPR000048 GO:0005515
Bma10g00020 805 Coils Coil 709 743 - -
Bma10g00020 805 MobiDBLite consensus disorder prediction 699 726 - -
Bma10g00020 805 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
Bma10g00020 805 Coils Coil 559 614 - -
Bma10g00020 805 Coils Coil 369 389 - -
Bma10g00020 805 MobiDBLite consensus disorder prediction 495 518 - -
Bma10g00020 805 Coils Coil 404 424 - -
Bma10g00020 805 Coils Coil 632 680 - -
Bma10g00020 805 PANTHER INTERACTOR OF CONSTITUTIVE ACTIVE ROPS 2, CHLOROPLASTIC 263 805 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00330 Bma-Chr6:6805939 Bma10g00020 Bma-Chr10:311338 7.59E-10 dispersed
Bma08g01144 Bma-Chr8:50511458 Bma10g00020 Bma-Chr10:311338 1.36E-41 dispersed
Bma10g00020 Bma-Chr10:311338 Bma01g02209 Bma-Chr1:79004323 1.85E-31 dispersed
Bma15g00843 Bma-Chr15:21264274 Bma10g00020 Bma-Chr10:311338 0 transposed
Bma01g01915 Bma-Chr1:70484959 Bma10g00020 Bma-Chr10:311338 1.63E-83 wgd
Bma10g00020 Bma-Chr10:311338 Bma14g00473 Bma-Chr14:5354312 1.70E-112 wgd
Bma10g00020 Bma-Chr10:311338 Bma04g01643 Bma-Chr4:52333556 9.62E-08 wgd
Bma10g00020 Bma-Chr10:311338 Bma04g00617 Bma-Chr4:5873489 9.86E-113 wgd
Bma10g00020 Bma-Chr10:311338 Bma07g01510 Bma-Chr7:50703802 2.61E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00020 - - vvi:100265405 601.282