Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00024 ATGCAAATGATGCTCAGTGATGCTTTTTCTGTGCCCACTTCCGTAGAAGCGTTTGCTCAAGAACAAACTTCAAACCCTAATCCTAAAACTAATGCGAATCCAGTCGTTAAGAAGAAGAGGAGTCTCCCAGGTACACCAGATCCAGATGCCGAGGTCATTGCTTTATCTCCTAACAGCCTCATGGCGACAAATCGATTCATCTGCGAAATATGCAACAAAGGGTTTCAAAGAGACCAAAACTTACAGCTGCACAGAAGAGGTCACAATCTCCCATGGAAGCTCCGGCAAAGGTCGAACAAAGAAGTGCGAAAGAAGGTCTATATTTGCCCTGAAAAAGGTTGCGTACACCATGACCCGTCTCGAGCCCTGGGCGATCTCACCGGAATAAAAAAGCATTTCAGCAGAAAACATGGCGAAAAGAAGTGGAAGTGTGAAAAATGTTCTAAGAAATACGCAGTTCAGTCGGACTGGAAAGCTCACTCTAAAACCTGCGGAACGAGAGAGTACAAATGTGACTGCGGAACTCTCTTCTCCAGGAAAGATAGCTTCATCACCCATAGGGCTTTCTGTGATGCACTGGCCGAAGAAAGTGCAAGATTCACTTCAGTTTCAGCTTCAAATCTAAGTTTCATAAATGATACGGTAAATGAAACTCTAATCGATTCTCAAAACAGTTTGAATCATGGTTTTTCTAGTCATCAAGCAGTTCAAGATGCTTCTGGATTTCCCCAACTCCGATCAGATTTTCTTCGACCCTTTAGCGATATGGGTTCCGCCAACACCATCGGAGCAGATCAGAACGAAACAAGACTGTCACTTTGGATGAATCAAGCGAACTCTCAGTTCAATCCAATGGAAGAACCAGCGAATGCTAATGTTTTCGGATTGTCTAGTTCTTCAGCTTTGCTGGAGATGGTGCAAACGCCACCTTCTGATCTCTTTGGCAGTCTGCCTCATTCGACCTTCAGAATTTCTGATCAATATTCGGCCTTAAACAAAAATACAACTCTTTCTGAAGATTCTAAAAACCGAAATCTATCTTTATCTGTAGTGGAAGGACTGAAAGAAGAATGCGTAAGCAAAGGAAATATGCTGGAATCTTTGTCTTTTTATCCAGACTCTCATACTGAAAACAAACATTCAAAACCAGCTTCACCAATGTCAGCAACTGCACTTTTGCAGAAGGCAGCGCAAATGGGTTCTACAAGAAGCAGCCCATCTATTATTCCAAACTGCAGCTTCGGACTAATGACTCCATCTTCTACATCAATCTTCAATTCTCAAACCAAACCGAGAAGTGATATTCATACCGTCTTTCAAAGTACAAAACAGGCGGAGAACTTTGCAGCTATGGCAGCCTGCAATGGTCTAGATCAGATTATGATGCAAACGAGTGGAATGAAGCAAAAAGAAGCAGTGGGATTTGGCTCTAATGGAGTTGGAAATGGTTTGACTAGGGACTTTCTTGGAGTGGGAGTGAAAGAGGGACACCGTCGTCCATTTTTGGAACGTGAGCTGGCGAAGCTATCGGGCATGAGCTCGGCCTCGGGTAGTAGTTTGAGCCATTGCAGTGGCAATCAGTGA 1584 43.62 MQMMLSDAFSVPTSVEAFAQEQTSNPNPKTNANPVVKKKRSLPGTPDPDAEVIALSPNSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKGCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARFTSVSASNLSFINDTVNETLIDSQNSLNHGFSSHQAVQDASGFPQLRSDFLRPFSDMGSANTIGADQNETRLSLWMNQANSQFNPMEEPANANVFGLSSSSALLEMVQTPPSDLFGSLPHSTFRISDQYSALNKNTTLSEDSKNRNLSLSVVEGLKEECVSKGNMLESLSFYPDSHTENKHSKPASPMSATALLQKAAQMGSTRSSPSIIPNCSFGLMTPSSTSIFNSQTKPRSDIHTVFQSTKQAENFAAMAACNGLDQIMMQTSGMKQKEAVGFGSNGVGNGLTRDFLGVGVKEGHRRPFLERELAKLSGMSSASGSSLSHCSGNQ 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 346417 348476 + Bma003646.1 Bma10g00024 89087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00024 527 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Bma10g00024 527 Gene3D Classic Zinc Finger 120 199 - -
Bma10g00024 527 MobiDBLite consensus disorder prediction 19 48 - -
Bma10g00024 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Bma10g00024 527 PANTHER ZINC FINGER PROTEIN JACKDAW 7 513 IPR033243 GO:0003700
Bma10g00024 527 MobiDBLite consensus disorder prediction 19 34 - -
Bma10g00024 527 SMART c2h2final6 107 137 IPR013087 -
Bma10g00024 527 SMART c2h2final6 66 88 IPR013087 -
Bma10g00024 527 SMART c2h2final6 142 162 IPR013087 -
Bma10g00024 527 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Bma10g00024 527 Gene3D Classic Zinc Finger 46 114 - -
Bma10g00024 527 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Bma10g00024 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 513 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00850 Bma-Chr9:47527530 Bma10g00024 Bma-Chr10:346417 6.50E-23 dispersed
Bma10g00024 Bma-Chr10:346417 Bma15g01004 Bma-Chr15:39068700 3.15E-113 dispersed
Bma07g01471 Bma-Chr7:50364342 Bma10g00024 Bma-Chr10:346417 5.23E-24 transposed
Bma15g00065 Bma-Chr15:786924 Bma10g00024 Bma-Chr10:346417 7.92E-113 transposed
Bma10g00024 Bma-Chr10:346417 Bma07g01503 Bma-Chr7:50640066 2.44E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57889 PF12171 zf-C2H2_jaz 7.80E-05 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00024 K25870 - jre:109011168 587.8