Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma10g00026 | ATGGACCAGTTATGCCTCCTCAAACTGCCCTACGTAGAGCACCAGAAAGCAGTTACCATACGAAATGATGTCAACCTGAAGAAGGAGACTCTGAGGATTGAACCGGACAGCCAAAATCCGGGGAAGTTTCTCGTCACCTTTATGTTTGATGCAACGGTTCCCGGCAGCATCACTGTTATGTTCTTTGCAAAAGAAGGGGAAGGTTGTAATCTGACACCCATGAAGGAAGACGTTCTCAAACCGGTGACGGTAGATTTTGAGAAGGGCCTGGGGCAAAAGTTCAGGCAGCCTGTCGGAACAGGGATTGAACTGGCAACATTTGAGGAAGAGTTATTGAAACTAAGTGAGATGGATGTGTATCCTCTGGCAATAAAAGCAGAGGCTCTTCTAGAGAATCAAACTGGAGCAGATGGAAGCCAAATACCAGGCACTAACAACTCCCAAATTACTCAGGCGGTGATCGAAAAAGACAGAGGTGAGTACCAGGTGAAAGTTTGGAAGCAGATTTTGTGGGTCAATAATATGAGATATGAGCTGCAAGAGATATTTGGGATTGGGAATTCAGTTGAGGGTGATGTTGATGGAAATGATCCTGGAAAAGAATGCGTCATTTGCTTGTCCGAACCACGCGACACCACTGTTCTTCCTTGCCGGCACATGTGTATGTGCAATGGCTGCGCAAAGGTTTTGAGGTTCCAGACGAACCGGTGCCCTATCTGCAGACAACCGGTCGACAGGCTTTTGGAGATCAAGGTCAGTGGTGGATCCGACGAATGA | 777 | 47.23 | MDQLCLLKLPYVEHQKAVTIRNDVNLKKETLRIEPDSQNPGKFLVTFMFDATVPGSITVMFFAKEGEGCNLTPMKEDVLKPVTVDFEKGLGQKFRQPVGTGIELATFEEELLKLSEMDVYPLAIKAEALLENQTGADGSQIPGTNNSQITQAVIEKDRGEYQVKVWKQILWVNNMRYELQEIFGIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCNGCAKVLRFQTNRCPICRQPVDRLLEIKVSGGSDE | 258 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 356182 | 357940 | - | Bma003648.1 | Bma10g00026 | 89089 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma10g00026 | 258 | SUPERFAMILY | RING/U-box | 201 | 247 | - | - | |
| Bma10g00026 | 258 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 201 | 241 | IPR045195 | - | |
| Bma10g00026 | 258 | ProSiteProfiles | Zinc finger RING-type profile. | 202 | 241 | IPR001841 | - | |
| Bma10g00026 | 258 | SMART | ring_2 | 202 | 240 | IPR001841 | - | |
| Bma10g00026 | 258 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 10 | 254 | - | - | |
| Bma10g00026 | 258 | Pfam | Zinc finger, C3HC4 type (RING finger) | 200 | 246 | - | - | |
| Bma10g00026 | 258 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 251 | IPR013083 | - | |
| Bma10g00026 | 258 | PANTHER | MAHOGUNIN | 10 | 254 | IPR045194 | GO:0061630 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma10g00026 | Bma-Chr10:356182 | Bma12g00199 | Bma-Chr12:2656672 | 6.43E-08 | dispersed | |
| Bma10g00026 | Bma-Chr10:356182 | Bma07g00066 | Bma-Chr7:1489628 | 4.00E-08 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma10g00026 | - | - | cmos:111461062 | 421.009 |