Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00051 ATGGCGATTGTCCGCATTTCCGTAGGTAGGCCGGAGGAGGCCACTCATCCTGACGCTTTGAAGGCCGCGTTGGCTGAGTTCTTTTCAACGTTGATTTTCGTTTTCGCTGGCCAAGGTTCCGGCATGGCCTTCTCTAAGCTGACGAACGACGGCTCGGCTACCCCATCCGGCCTCATTGCGGCCTCTCTCGCTCACGGGTTTGGCCTTTTTGTGGCCGTGTCCGTCGGTGCGAATATCTCCGGCGGCCATGTTAACCCTGCTGTCACCTTCGGAGCATTCGTCGGAGGTAACATCACTCTTTTACGTGCCATTCTTTATTGGATCGGCCAACTTCTCGGGTCAACCGTCGCCTGTTTGCTCCTCTGGTTCGTCACTGACATGTCTACAACAGCTTTCTCTCTGTCATCCGGCGTGGGAGTTTGGAACGCTGTTGTTTTCGAAATTGTGATGACATTCGGATTAGTCTACACAGTTTACGCCACCGCCATCGATCCCAAGAAGGGCAACCTGGGAACCATTGCTCCGATTGCCATTGGTTTGATCGTGGGCGCTAACATTTTAGTCGGCGGAGCTTTCGACGGAGCCTCCATGAACCCAGCCGTGTCTTTTGGCCCAGCCTTGGTTAGCTGGACATGGAAAAACCAATGGGTCTACTGGGTCGGACCACTCATCGGTGGCGGCTTAGCCGGTATAGTGTACGAGTTCTTCTTTATCAACCGTAGCCACGAGCAGCTTCCGACAACCGACTATTAG 753 54.05 MAIVRISVGRPEEATHPDALKAALAEFFSTLIFVFAGQGSGMAFSKLTNDGSATPSGLIAASLAHGFGLFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRAILYWIGQLLGSTVACLLLWFVTDMSTTAFSLSSGVGVWNAVVFEIVMTFGLVYTVYATAIDPKKGNLGTIAPIAIGLIVGANILVGGAFDGASMNPAVSFGPALVSWTWKNQWVYWVGPLIGGGLAGIVYEFFFINRSHEQLPTTDY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 539004 540117 - Bma003669.1 Bma10g00051 89114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00051 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Bma10g00051 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Bma10g00051 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma10g00051 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma10g00051 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma10g00051 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma10g00051 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma10g00051 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma10g00051 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma10g00051 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
Bma10g00051 250 SUPERFAMILY Aquaporin-like 13 245 IPR023271 -
Bma10g00051 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma10g00051 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01942 Bma-Chr1:71826589 Bma10g00051 Bma-Chr10:539004 1.03E-119 dispersed
Bma10g00051 Bma-Chr10:539004 Bma12g01165 Bma-Chr12:44195489 3.62E-53 dispersed
Bma02g00090 Bma-Chr2:785914 Bma10g00051 Bma-Chr10:539004 4.30E-70 transposed
Bma07g00816 Bma-Chr7:25810137 Bma10g00051 Bma-Chr10:539004 1.33E-20 transposed
Bma10g00051 Bma-Chr10:539004 Bma04g00584 Bma-Chr4:5587666 8.23E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00051 K09873 - nnu:104587343 437.958