Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00062 ATGGCGGATGCGACTTCCTCTGATAACGCGGTTTCGAACAGCTCCAGCGCAGCAACTGAAGTCACGTCTGTTGTGGCGGAGCCAAAACGTTCTTGGGCCGACGAAGCAGATGATCCGATTGAAGGTACTGGAGATTCAACTTCGACTGTAGCCGAGGAAATCGATTCTCTTACAATTGAGGAGCAGCAAACACTCGATGAACCGGATGATTCTAACATCAGCGCTGTTACGTCTGGTGACACGCCATATACATCAGCAAGTACCTTTGAAGATTTGAATCTATCACCTGAGCTATTGAAGGGTTTATATGTTGAGATGAAATTCCAGAAGCCTAGTAAAATTCAAGCTATCACCCTGCCAATGATTTTGACTCCTCCACACAAACATTTAGTTGCTCAAGCACACAATGGTTCTGGCAAGACAACTTGCTTTGTGCTTGGCATGTTGAGTCGTGTTGATCCAAATCTAAAGGCTCCTCAAGCACTTTGTATCTGCCCTACAAGAGAGCTGGCTATTCAGAATATTGAAGTTCTTAAGAAGATGGGAAAGTATACTGGCATAACATCAGAGTGTGCTGTGCCAATGGAAAGTACAAATAATGTATCAATCCTAAGACGCGAACCTGTGTCTGCACAAGTAGTTATTGGAACTCCGGGGACAATAAAGAAATGGATTACATCCAAAAAATTGGGTGTGAGCTACATAAGGATTCTCGTTTTTGACGAGGCTGATCACATGCTCGCCGAGGATGGTTTTCAAGATGATTCAGTGAGAATAAGGAATCACATTGAAAAAAGTGGCTCCCAATGCCAGGTCCTTTTATTCTCAGCTACATTTAATGATGTAGTAAAAAAGTTCGTCTCAATAGTTGTAAAACAATACAATGAACTTTATGTGAAGAAAGAAGAACTATCTTTGGAAGGGGTGAAGCAGTATAAGGTGATCTGTCTTAACGAAGCTGCCAAAATTCAGGCTATTAAGGACAGAATTTTCGAATTGGGGGAGAATTTGGGGCAGACGATTATTTTTGTCCGCACAAGGAACAGTGCCAGTAGGTTGCACAAAGAACTAGTTAAATATGGTTATGATGTGACTACTATTCAAGGAGCTCTTAGGCATGAGGACAGAGACAAAATAGTCAAAGAGTTTAAAGATGGTTTGACTAAAGTTCTCATATCAACAGATCTTCTGGCTCGAGGTTTTGACCAACAACAGGTTAACCTGGTTATCAATTACGATCTTCCTGTGAAACATGAATCGACAAACAAAAGCTCTTTCCAGCCTGAACCTGATTATGAGGTGTATTTGCATAGGATTGGTAGGGCTGGGCGATTTGGCCGTAAAGGAGCTGTGTTTAACTTGATCTGTGGCCAAATGGACGCAATGCTGATGGCGAAAATTCAGGAATATTTTGGCTCTCAAGTGACGGAGGTAAAGGTTCTTTACCATTTAGTAGATTTCAGTATTATGTTGATTTTTGAGCCACACATATTTGCTGGTTTTACGTGA 1509 41.62 MADATSSDNAVSNSSSAATEVTSVVAEPKRSWADEADDPIEGTGDSTSTVAEEIDSLTIEEQQTLDEPDDSNISAVTSGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAITLPMILTPPHKHLVAQAHNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNIEVLKKMGKYTGITSECAVPMESTNNVSILRREPVSAQVVIGTPGTIKKWITSKKLGVSYIRILVFDEADHMLAEDGFQDDSVRIRNHIEKSGSQCQVLLFSATFNDVVKKFVSIVVKQYNELYVKKEELSLEGVKQYKVICLNEAAKIQAIKDRIFELGENLGQTIIFVRTRNSASRLHKELVKYGYDVTTIQGALRHEDRDKIVKEFKDGLTKVLISTDLLARGFDQQQVNLVINYDLPVKHESTNKSSFQPEPDYEVYLHRIGRAGRFGRKGAVFNLICGQMDAMLMAKIQEYFGSQVTEVKVLYHLVDFSIMLIFEPHIFAGFT 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 597551 600913 - Bma003681.1 Bma10g00062 89125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00062 502 Pfam DEAD/DEAH box helicase 113 285 IPR011545 GO:0003676|GO:0005524
Bma10g00062 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 87 116 IPR014014 GO:0003724
Bma10g00062 502 CDD SF2_C_DEAD 309 455 - -
Bma10g00062 502 Pfam Helicase conserved C-terminal domain 322 446 IPR001650 -
Bma10g00062 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 459 IPR027417 -
Bma10g00062 502 SMART helicmild6 351 446 IPR001650 -
Bma10g00062 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 297 IPR014001 -
Bma10g00062 502 MobiDBLite consensus disorder prediction 1 88 - -
Bma10g00062 502 Gene3D - 304 481 IPR027417 -
Bma10g00062 502 MobiDBLite consensus disorder prediction 42 58 - -
Bma10g00062 502 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 64 477 - -
Bma10g00062 502 MobiDBLite consensus disorder prediction 1 22 - -
Bma10g00062 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 486 IPR001650 -
Bma10g00062 502 PANTHER DEAD-BOX HELICASE DBP80 64 477 - -
Bma10g00062 502 CDD DEADc_DDX19_DDX25 94 297 - -
Bma10g00062 502 SMART ultradead3 107 312 IPR014001 -
Bma10g00062 502 MobiDBLite consensus disorder prediction 68 88 - -
Bma10g00062 502 Gene3D - 67 303 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00062 Bma-Chr10:597551 Bma10g00922 Bma-Chr10:18648748 2.49E-62 dispersed
Bma10g00062 Bma-Chr10:597551 Bma15g00330 Bma-Chr15:3207888 1.02E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00062 K18655 - pvy:116131273 682.945