Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00064 GCTTCGATAATGGAGGTCGCTCCCATGGCGTCCCCCGCCCTTACTTCGCTTTACGTCGGTGACCTTCATCCCGACGTTACGGACGACCTTCTTCATGATGCTTTCTCCCAATTCGACAGCCTCAACTCGGTTCGTGTCTGTAGGGACTCCAACACTGGCCGTCCCCTCTGTTACGGTTATGTCAATTTTACCTCTCCTCAAGATGCAATCGACGCTATTGCGGAAAAGAACCACTGTTTTCTGAATGGGAAAATGATAAGAGTCATGCATTTGCATCGTGATTCCGATGCAAGGAAAAGTGGAATTGGCAACGTGTTTGTCAAGAACTTGAGTGATTCGATCAGTAATGCCGGGCTCGAAGAGATATTTAAGAGTTTTGGTACTATTGTCTCCTGCAAAGTTTCCATGACTGACGATGGGAAGAGTAGATGTTATGGTTTTGTTCAATTTGAGTCTGAAGATTCTGCAATTGCTGCTATTGAGAACTTACATGGCTTAACCTTAGATGGGAAGCAGATCTACGTCGGGAGGTTTATTAAGAAGAGCGATCGACTCATGGCCAACAACGATACTAAATATACAAATTTGTATATGAAGAATTTGGATCCTGAAATTGGGGAGGAGCTTCTGCATAAAAAGTTCTCGATTGCTAATCCTCCCAGACAGGCTAGGCGTAACAGGGGAAGGTTGAATGAGCAATTTCTATCTCTGAATAATGCTCATGCTGGTTTATATAGACAATACTTCCACCCACCCAATCAATCTCTATTTTACTCCAGCGATTCAGCCAATCAGCAGGTTCTCTTCCACGTTCATTTGGTACAGTCTGGACAGTCCATGTATGTACCAAAGTTGCCTGCAGACGAGCTTGCTGGTTCCGAAAAAGGTAGTTTCGAGTCAGAGAGCTCGCAGATACTAAGCATAGAGCTGTCTGCTGCTTCTCCCGAGAAGCAGAAACAAATACTCGGTGAACGTCTCCGTCCACTCGTCGAAAAATATAAGCCGGAGCTTGCAGCGAAAATAACAGGAATGCTTTTGGAGTTGGACAGCTCTGAATTGCTACACTTACTGGATTCGCCAGAGTCTCTCGGTGCCAAAGTGGAGGAAGCAGTCCAAGTTCTGAAGATTTCCAAGAGCAACGTATCGAGCCCAGACTCTCTTCATTCCAGTTTTTTATCAGCTGAGGTTGCAGTCAGTTGA 1200 45.33 ASIMEVAPMASPALTSLYVGDLHPDVTDDLLHDAFSQFDSLNSVRVCRDSNTGRPLCYGYVNFTSPQDAIDAIAEKNHCFLNGKMIRVMHLHRDSDARKSGIGNVFVKNLSDSISNAGLEEIFKSFGTIVSCKVSMTDDGKSRCYGFVQFESEDSAIAAIENLHGLTLDGKQIYVGRFIKKSDRLMANNDTKYTNLYMKNLDPEIGEELLHKKFSIANPPRQARRNRGRLNEQFLSLNNAHAGLYRQYFHPPNQSLFYSSDSANQQVLFHVHLVQSGQSMYVPKLPADELAGSEKGSFESESSQILSIELSAASPEKQKQILGERLRPLVEKYKPELAAKITGMLLELDSSELLHLLDSPESLGAKVEEAVQVLKISKSNVSSPDSLHSSFLSAEVAVS 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 605967 609500 + Bma003683.1 Bma10g00064 89127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00064 399 SUPERFAMILY RNA-binding domain, RBD 9 99 IPR035979 GO:0003676
Bma10g00064 399 CDD RRM1_I_PABPs 16 94 - -
Bma10g00064 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 86 IPR000504 GO:0003723
Bma10g00064 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 173 IPR000504 GO:0003723
Bma10g00064 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 93 IPR000504 GO:0003723
Bma10g00064 399 PANTHER POLYADENYLATE-BINDING PROTEIN 7 10 215 - -
Bma10g00064 399 PANTHER POLYADENYLATE-BINDING PROTEIN 7 221 380 - -
Bma10g00064 399 SMART poly_2 314 377 IPR002004 GO:0003723
Bma10g00064 399 Pfam Poly-adenylate binding protein, unique domain 309 374 IPR002004 GO:0003723
Bma10g00064 399 CDD RRM2_I_PABPs 101 177 IPR045305 -
Bma10g00064 399 Gene3D - 301 392 - -
Bma10g00064 399 Gene3D - 104 193 IPR012677 -
Bma10g00064 399 SMART rrm1_1 104 176 IPR000504 GO:0003723
Bma10g00064 399 SMART rrm1_1 16 89 IPR000504 GO:0003723
Bma10g00064 399 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 302 379 IPR002004 GO:0003723
Bma10g00064 399 Gene3D - 5 103 IPR012677 -
Bma10g00064 399 SUPERFAMILY RNA-binding domain, RBD 104 228 IPR035979 GO:0003676
Bma10g00064 399 SUPERFAMILY PABC (PABP) domain 306 381 IPR036053 GO:0003723
Bma10g00064 399 PANTHER RNA BINDING PROTEIN 10 215 - -
Bma10g00064 399 PANTHER RNA BINDING PROTEIN 221 380 - -
Bma10g00064 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 180 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01610 Bma10g00064 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00064 Bma-Chr10:605967 Bma05g01222 Bma-Chr5:51629348 1.13E-06 dispersed
Bma10g00064 Bma-Chr10:605967 Bma04g01610 Bma-Chr4:52037302 1.30E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00064 K13126 - csv:101203793 290.426