Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma10g00065 | ATGGAGCTTTTTCTTCTTCCTTGCCATCAAACTAACCCTACTATCCTGCAGAAGCCTCTCTCCCTAATTCGCAATACAGGAAAGAGCAGTCCCAAGAGGAATTCATACGCCTTGCCATGTCGCTGTTCATCGTCATCCTCGGACTGTGAATTTACAGAACAAACTAAACAACCATTGCGAGGTGATGGACGGAGAGAATTGCTTGGTGCCATCCTATCAACTGCTGCCGGCGTTTATGTCTGTGATGTAGCAGAGGCCGTTAGCACAAGTCGAAGGGCACTTAGAGGATCAAAAATACCTGAAAGTGAATTCAAAACCCTCCCCAATGGTCTAAAGTACTATGATATCAAGGTCGGCGGTGGAACAAAGGCCGTGACTGGATCTCGTGTTGCGGTCCATTATGTTGCTAAGTGGAGAGGCATCACATTTATGACAAGCAGGCAAGGGATGGGTGTTGGTGGAGGAACGCCTTACGGATTCGATGTAGGCCAATCTGAAAGAGGGTCAGTGCTCAAAGGATTAGATTTAGGTGTACAAGGCATGAGGGTGGGAGGGCAGAGACTGCTAATAGTTCCTCCTGAGCTAGCATATGGAAGCAAAGGAGTTCAGGAGATTCCCCCTAATGCAACCATTGAGGTAGAATTTCATCATATAATTTCCCAAACTTTCGACAATTAA | 678 | 46.46 | MELFLLPCHQTNPTILQKPLSLIRNTGKSSPKRNSYALPCRCSSSSSDCEFTEQTKQPLRGDGRRELLGAILSTAAGVYVCDVAEAVSTSRRALRGSKIPESEFKTLPNGLKYYDIKVGGGTKAVTGSRVAVHYVAKWRGITFMTSRQGMGVGGGTPYGFDVGQSERGSVLKGLDLGVQGMRVGGQRLLIVPPELAYGSKGVQEIPPNATIEVEFHHIISQTFDN | 225 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 611968 | 613754 | - | Bma003684.1 | Bma10g00065 | 89128 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma10g00065 | 225 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 127 | 221 | IPR001179 | GO:0003755 | |
| Bma10g00065 | 225 | SUPERFAMILY | FKBP-like | 84 | 212 | - | - | |
| Bma10g00065 | 225 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 122 | 212 | IPR001179 | GO:0003755 | |
| Bma10g00065 | 225 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-4, CHLOROPLASTIC | 8 | 215 | - | - | |
| Bma10g00065 | 225 | PANTHER | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA | 8 | 215 | - | - | |
| Bma10g00065 | 225 | Gene3D | - | 82 | 222 | IPR046357 | GO:0003755 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma01g01567 | Bma-Chr1:37093734 | Bma10g00065 | Bma-Chr10:611968 | 5.81E-13 | dispersed | |
| Bma01g02417 | Bma-Chr1:81772540 | Bma10g00065 | Bma-Chr10:611968 | 2.29E-16 | dispersed | |
| Bma10g00065 | Bma-Chr10:611968 | Bma15g01007 | Bma-Chr15:39265554 | 2.19E-10 | dispersed | |
| Bma10g00065 | Bma-Chr10:611968 | Bma15g00650 | Bma-Chr15:9407932 | 8.99E-12 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma10g00065 | - | - | mdm:103423311 | 326.635 |