Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00079 ATGGAGGATCAGTATGGTATGGCCGATCTTCGGCAGCTTATGAGTGGAGGGAGGTCCTATTTCCCTCCGGCTATTTCTCAGCACATTGAGTTTTTTCCTGGCTACCGGAATCTCCAACTGGCGTCAGGAGAACAACACCACCACCATCAGTACAACCTGACGATGATTCCCGGCAGTCAAGTTTCTGATATGATGCCAGACTTCAGGTCTGATTCCGTGGCGAGCAGTGCTCGAGTAGTTGGTGCGGCGGCGGCGACTGCCGGCTCTGCGCATACTTTAAGTGGTGGATTTGAAGTTGAAGCTGCGAGCTATGGCGGAGATGGAGGGTGTGGAAGATGGCCTAGGCAAGAGACGCTTACCCTTTTGGAGATCAGATCTCGTCTTGATTCCAAGTTCAAAGAGGCCAATCAAAAGGGTCCTCTCTGGGATGAAGTCTCGAGGATGATGTCTGAGGAATATGGGTATCAAAGAAGTGGAAAAAAATGCAGAGAAAAATTTGAAAATTTGTACAAATATTACAAGAAGACAAAGGAAGGCAAAGCTGGGAGACAAGATGGGAAACACTACAGGTTTTTTAGCCAACTTGAAGCGCTATATGGACAGACCAGCAACGGAGTTTCAGTTCCTGAAACACAAGTAGTTTCAGATAGTAGTTTAAAATTACATGGCAGAACCAATATGCAAACAGCTCGAGGTAATCATGTATCCACCAATCAGTTTCCCAAACACAGCGATAGCCTTAGTCTCTCTAATTCTTCAGAGTTCGATACCTCTTCCTCAGATGAATCTCACGATGTTGGAGTTACTGGAGGAGTGGAAAATGAGGGTTGGGAAAGGAGAATGAAGAGGAGAGGTAGGAAATGCTGGAAGGCGAAGATAAAAAGGTTCATCAATTCTCAAATGAGAAAGCTGATAGAGAAGCAAGAAGAATGGTTGGAGAAGCTAATGAAGAGCCTTGAGCAAAAAGAGAAAGAGAGGATGATAAAAGAGGAAGAATTCAGGAAAGATGAAGTGTCAAGGATTGAAAGAGAACATAGATTTTGGGCAAAGGAGAGGGCTTGGATTGAAGCTCGTGATGCTGCTTTCATGGAGGCCATGCAGAAGTTAACTGGAAGAGAAGTCATCAGATTGTCTTCACTTGGTGAAAACCAGAATGAAGATGGAAGTGAGATTCTGAACAACAATGGCTGTCTCAAAGGGGATGATACATGGAGAGAATGCGAGATAACAAGGCTAATTCAACTAAGAAGCGGAATCGAATCCGGCTTTCGGCAAAGTGGAGAAGACAGCACATGGGAGGAAATCGGAGCAAAAATGGCTTGTGTCGGATATGAAAGGAGTGGTTTGAGTTGCAAAGAGAAATGGGAAAGTATCAACAAGTATATGAAGAAGAACAGCAACGGCAAGAAACGCAAAGACAATTCGAGAGGGTTTGATTGCTTTCGAAACGAATCCTGTCCGTATAATCAAGGTGGCATAACACATGGAGAAATCAAAGAGGAAGAGCATCAAGAGACAGCAAGAGCTCAAATCAACGAAGGGTCTTCACCCAATCCTAGTGCAAATGCTAATCATGTTCAAGATAATTGTTTTAGGTTCCTTTGGGAGAAGGGGAGTGCGTATGGGAAAGTTATGGTATGA 1641 44.3 MEDQYGMADLRQLMSGGRSYFPPAISQHIEFFPGYRNLQLASGEQHHHHQYNLTMIPGSQVSDMMPDFRSDSVASSARVVGAAAATAGSAHTLSGGFEVEAASYGGDGGCGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRMMSEEYGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFSQLEALYGQTSNGVSVPETQVVSDSSLKLHGRTNMQTARGNHVSTNQFPKHSDSLSLSNSSEFDTSSSDESHDVGVTGGVENEGWERRMKRRGRKCWKAKIKRFINSQMRKLIEKQEEWLEKLMKSLEQKEKERMIKEEEFRKDEVSRIEREHRFWAKERAWIEARDAAFMEAMQKLTGREVIRLSSLGENQNEDGSEILNNNGCLKGDDTWRECEITRLIQLRSGIESGFRQSGEDSTWEEIGAKMACVGYERSGLSCKEKWESINKYMKKNSNGKKRKDNSRGFDCFRNESCPYNQGGITHGEIKEEEHQETARAQINEGSSPNPSANANHVQDNCFRFLWEKGSAYGKVMV 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 799677 801890 - Bma003697.1 Bma10g00079 89142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00079 546 ProSiteProfiles Myb-like domain profile. 111 170 IPR001005 -
Bma10g00079 546 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 19 537 - -
Bma10g00079 546 Pfam Myb/SANT-like DNA-binding domain 402 473 IPR044822 -
Bma10g00079 546 Pfam Myb/SANT-like DNA-binding domain 112 198 IPR044822 -
Bma10g00079 546 ProSiteProfiles Myb-like domain profile. 404 459 IPR001005 -
Bma10g00079 546 CDD GT1 112 177 - -
Bma10g00079 546 MobiDBLite consensus disorder prediction 218 265 - -
Bma10g00079 546 MobiDBLite consensus disorder prediction 218 271 - -
Bma10g00079 546 Coils Coil 302 332 - -
Bma10g00079 546 PANTHER - 19 537 - -
Bma10g00079 546 Gene3D - 113 175 - -
Bma10g00079 546 Gene3D - 404 464 - -
Bma10g00079 546 CDD GT1 403 464 - -
Bma10g00079 546 SMART sant 400 461 IPR001005 -
Bma10g00079 546 SMART sant 109 172 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01961 Bma10g00079 CCT
Bma04g01593 Bma10g00079 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00367 Bma-Chr4:2943805 Bma10g00079 Bma-Chr10:799677 3.83E-13 dispersed
Bma04g00368 Bma-Chr4:2952372 Bma10g00079 Bma-Chr10:799677 1.21E-18 dispersed
Bma14g01269 Bma-Chr14:21114551 Bma10g00079 Bma-Chr10:799677 9.33E-13 dispersed
Bma01g01904 Bma-Chr1:70275486 Bma10g00079 Bma-Chr10:799677 1.36E-74 transposed
Bma01g01959 Bma-Chr1:72674724 Bma10g00079 Bma-Chr10:799677 3.97E-126 wgd
Bma10g00079 Bma-Chr10:799677 Bma04g01593 Bma-Chr4:51863077 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57894 PF13837 Myb_DNA-bind_4 1.10E-10 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00079 - - tcc:18598163 561.607