Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00080 TTCATGTATTTTTCACAGTCAGCGACGAATGACGAGGCTTGTGGAAGTAACAATGGTGGTTCTCGTCAGGGTTCTAAGGGTAAGAATAATGATACCGGTCGACACCCAGTTTATAAAGGAGTGAGACGCCGGAGCACCGGGAAATGGGTGTCGGAGATAAGGGAGCCGAGGAAACCGACTAGGATTTGGTTAGGGACATTTGCTTCGCCGGAAATGGCGGCAGTTGCCTATGATGTTGCCGCCCTGGCTCTAAAGGGTCAAGACGCAGAGCTTAACTTCCCCAACTCAGCGTCTTCTTTGCCGGTTCCAGCTTCCACGTCCCCACAGGATATTCAGGCGGCCGCAGCTTCTGCCGCCGCCGCTTTAGGAGCTGCAGCTGCTGCCATGGAGGCGGGGAATTTCAGCTCATTGGAGACTGAAAATGATGGAGGAGAAAAAGCAATGGAGAGAGACAGATCATCGTCAATGGTTCACGAGTTTGTGGATGAAGATTTGATCTTCGATATGCCTAATGTGATAATGAACATGGCTGAAGGCATGCTTCTGAGCCCTCCCCGTTTGAACATCGCCGGAGATGAATTTCCATCCGGTGAAGATAACGCAGACCATACTCTTTGGAAATTCCCTTAA 630 50.48 FMYFSQSATNDEACGSNNGGSRQGSKGKNNDTGRHPVYKGVRRRSTGKWVSEIREPRKPTRIWLGTFASPEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASTSPQDIQAAAASAAAALGAAAAAMEAGNFSSLETENDGGEKAMERDRSSSMVHEFVDEDLIFDMPNVIMNMAEGMLLSPPRLNIAGDEFPSGEDNADHTLWKFP 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 807382 808011 + Bma003698.1 Bma10g00080 89143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00080 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 209 - -
Bma10g00080 209 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Bma10g00080 209 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700|GO:0006355
Bma10g00080 209 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Bma10g00080 209 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Bma10g00080 209 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Bma10g00080 209 Pfam AP2 domain 36 86 IPR001471 GO:0003700|GO:0006355
Bma10g00080 209 MobiDBLite consensus disorder prediction 1 27 - -
Bma10g00080 209 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Bma10g00080 209 MobiDBLite consensus disorder prediction 1 44 - -
Bma10g00080 209 SUPERFAMILY DNA-binding domain 37 96 IPR016177 GO:0003677
Bma10g00080 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 17 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00804 Bma-Chr5:45399487 Bma10g00080 Bma-Chr10:807382 5.49E-46 dispersed
Bma10g00080 Bma-Chr10:807382 Bma14g02069 Bma-Chr14:44058205 2.02E-47 dispersed
Bma04g00571 Bma-Chr4:5170740 Bma10g00080 Bma-Chr10:807382 8.23E-78 transposed
Bma10g00080 Bma-Chr10:807382 Bma04g01592 Bma-Chr4:51857306 7.60E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57895 PF00847 AP2 1.70E-12 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00080 - - jre:108985007 242.276