Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00112 ATGTTTGAAAAGGCATTAACGCCCAGTGATGTCGGAAAACTGAACCGGCTTGTCATTCCGAAACAACACGCCGAGAAATACTTCCCGCTCGGAGATGTCGGAGACTCCGCCGACAAGGGTTTGCTTCTGAACTTCGAGGATGAGGCAGGAAAATCGTGGAGGTTCCGTTACTCTTACTGGAATAGTAGCCAAAGCTACGTTCTTACCAAGGGGTGGAGCCGGTATGTTAAAGAGAAGAGGCTGGCATCTGGTGACGTCGTTTTCTTTCAGCGACATCGGACGAACGGCGAGCGGTTGTTCATAGGGTGGAGGCGGCGGCCGGCGCAGCGTAGCAGCAGTGCAGTGATGGCACAGGAAGGTAATGGTAATAGTAATCAACGGAGTGGGGGGTGGACCAGATTGTTCTATTCTGCGAATCCTTATCCCGAACACAGCCATCATCCTGATCATCAGCTTCGTCTCCATCATTATCATCCAGCGCCATACCAACCTGATTGTCTTCATGCTGGGTCAGTCTCCGGCCACAGCCCAACGGCTTCAGTAGGAAACTCGAAGATACTGAGACTTTTTGGTGTAAACATGGAGTGCCAAACCCACGCCTCCGACGACCCATCTACGCCTTCTCCTTCTCTTCTAACCAAATCGGCGACACCCAATCACCAGTTCTTCCCGCAGTATATTTCTTCAAATCCTGCTAATCATACGGATTTAACTTTCTCCAAAGATGTCAACAAGATGAGAAATCGCCGAGGATAA 756 50.26 MFEKALTPSDVGKLNRLVIPKQHAEKYFPLGDVGDSADKGLLLNFEDEAGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLASGDVVFFQRHRTNGERLFIGWRRRPAQRSSSAVMAQEGNGNSNQRSGGWTRLFYSANPYPEHSHHPDHQLRLHHYHPAPYQPDCLHAGSVSGHSPTASVGNSKILRLFGVNMECQTHASDDPSTPSPSLLTKSATPNHQFFPQYISSNPANHTDLTFSKDVNKMRNRRG 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1056001 1057666 - Bma003733.1 Bma10g00112 89175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00112 251 SMART B3_2 2 107 IPR003340 GO:0003677
Bma10g00112 251 Gene3D - 1 116 IPR015300 -
Bma10g00112 251 SUPERFAMILY DNA-binding pseudobarrel domain 1 106 IPR015300 -
Bma10g00112 251 Pfam B3 DNA binding domain 2 106 IPR003340 GO:0003677
Bma10g00112 251 MobiDBLite consensus disorder prediction 222 251 - -
Bma10g00112 251 MobiDBLite consensus disorder prediction 198 217 - -
Bma10g00112 251 ProSiteProfiles B3 DNA-binding domain profile. 2 106 IPR003340 GO:0003677
Bma10g00112 251 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 210 IPR044800 GO:0003700
Bma10g00112 251 CDD B3_DNA 1 97 IPR003340 GO:0003677
Bma10g00112 251 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 1 210 - -
Bma10g00112 251 MobiDBLite consensus disorder prediction 222 239 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01562 Bma10g00112 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01046 Bma-Chr7:42169312 Bma10g00112 Bma-Chr10:1056001 4.07E-52 dispersed
Bma10g00112 Bma-Chr10:1056001 Bma14g00089 Bma-Chr14:1257805 1.69E-49 dispersed
Bma07g01588 Bma-Chr7:51165277 Bma10g00112 Bma-Chr10:1056001 1.11E-15 transposed
Bma10g00112 Bma-Chr10:1056001 Bma04g01562 Bma-Chr4:51641425 2.77E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57897 PF02362 B3 2.60E-30 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00112 - - vvi:100245964 305.449