Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00130 TTGAGAAGTTCGAAGATGGCAGATGTCGACATTCCTACTTACTTTCTCTGCCCGATTTCTCTGGAGATCATGAAAGATCCGGTCACTGTTTCGTCGGGGATAACCTACGACCGTCAAAGCATAGAGAAATGGTTGTATTCAAATAGAAACGATTTTTGTCCTGTTTCGAAACAACTACTCTCCGGCTCCGATCTCACTCCGAACCATACTCTCCGGCGACTTATTCAAGCGTGGTGCACCGTCAACGCCTCCAACAACGTCGAGAGAATTCCGACGCCGAAACCTCCTGTTAGCAAGACGCAGATCGTCAAGATTCTCAATGATGCGAAATCACCTCTTTCTCAGCTAAAATGTCTGAAAAATCTCCGATCTATTGCCGCCGAGAGCGAGACTAATAAACGTTGCATCGAATCTGCCGGAGCGGTAGAGTTTTTAGCTTCAATAGTAATTTCCTTCGTTTCCTACTCTCCGGAAGAAGATTCCGGCATGGGTTTGGATCGCACGAGAGCGTGTGACGAGGCTTTGAGTACTCTACAAAATCTCCAAATCTCCGAAGCCGGGATGAAATCTCTAGGCGGAAAAAATGGCGAATTCATCGAAGCCCTAGTCAAAGTAATGCAACGAGGGAGCTACGATTCACGAGCCTATTCAACCATGTTATTGAAATCAATACTCGAACTCGCCGATCCGACAAAACTAAGTGATCTCAGAGTCGAGTTCTTCGCAGAAATAATTCAAGTTCTGAGCGACCAAATTTCCCACCAATCTTCTATTGCTGCACTGCAAATACTGATAAACCTTCTTCCATGTGGGCGGAATCGACTAAAAGCTGTCGAGGCCGGGGGCGTAACAGTTCTTATCGAGCTTCTTCTCACCTCGCCGGACCGGCGGCCATCCGAGATGATGCTCACTGCCTTGGACTTGCTATGCGGGTGCGCAAACGGGCGAGCCGAGTTGATCAGTCACGGAGCGGGTTTGGCGGTGGTGTCGAAGAAAATTCTTAGGGTTTCTAAGTTGGGAAACGAGAAAGCAGTGAGGATCTTGAACTCAATATCGAAATACTCCGCCACTCCAGCTGTTCTTCACGATATGCTGAGTCTAGGAGTTGTCGCAAAATTGTGTTTGATTCTTCAGGTCGAATGTGGGAAGCAAGGCGAAGGATAA 1164 47.59 LRSSKMADVDIPTYFLCPISLEIMKDPVTVSSGITYDRQSIEKWLYSNRNDFCPVSKQLLSGSDLTPNHTLRRLIQAWCTVNASNNVERIPTPKPPVSKTQIVKILNDAKSPLSQLKCLKNLRSIAAESETNKRCIESAGAVEFLASIVISFVSYSPEEDSGMGLDRTRACDEALSTLQNLQISEAGMKSLGGKNGEFIEALVKVMQRGSYDSRAYSTMLLKSILELADPTKLSDLRVEFFAEIIQVLSDQISHQSSIAALQILINLLPCGRNRLKAVEAGGVTVLIELLLTSPDRRPSEMMLTALDLLCGCANGRAELISHGAGLAVVSKKILRVSKLGNEKAVRILNSISKYSATPAVLHDMLSLGVVAKLCLILQVECGKQGEG 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1174608 1175771 + Bma003754.1 Bma10g00130 89193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00130 387 PANTHER WDSAM1 PROTEIN 6 384 IPR045185 GO:0061630
Bma10g00130 387 SUPERFAMILY RING/U-box 4 82 - -
Bma10g00130 387 Pfam U-box domain 11 81 IPR003613 GO:0004842|GO:0016567
Bma10g00130 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 6 384 - -
Bma10g00130 387 CDD RING-Ubox_PUB 15 58 IPR045210 -
Bma10g00130 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 90 IPR013083 -
Bma10g00130 387 SUPERFAMILY ARM repeat 102 383 IPR016024 -
Bma10g00130 387 ProSiteProfiles U-box domain profile. 10 85 IPR003613 GO:0004842|GO:0016567
Bma10g00130 387 Gene3D - 100 384 IPR011989 -
Bma10g00130 387 SMART Ubox_2 14 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01428 Bma-Chr7:50080210 Bma10g00130 Bma-Chr10:1174608 2.59E-87 dispersed
Bma15g00205 Bma-Chr15:2086657 Bma10g00130 Bma-Chr10:1174608 2.05E-50 dispersed
Bma06g01249 Bma-Chr6:49643526 Bma10g00130 Bma-Chr10:1174608 4.27E-68 transposed
Bma10g00429 Bma-Chr10:4554068 Bma10g00130 Bma-Chr10:1174608 8.14E-09 transposed
Bma10g00130 Bma-Chr10:1174608 Bma11g00250 Bma-Chr11:2202280 6.71E-142 wgd
Bma10g00130 Bma-Chr10:1174608 Bma04g01537 Bma-Chr4:51425901 1.19E-134 wgd
Bma10g00130 Bma-Chr10:1174608 Bma07g00207 Bma-Chr7:2517885 5.11E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00130 - - mnt:21399943 509.22