Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma10g00132 | ATGAACGACTTGTTCTCTTCCCGGTCTTTCTCCCGCGATCGAACAGGCGTTGAGATGACATATTCGAATTCACCGACCGCCGTCAATCTCGACAAGTTCTTCGAGGACGTTGAGTCGGTGAAGGACGAGCTGAAGGAGCTCGATGATTTGTATACTCGACTGAAACACTCTCACGAGCAGAGCAAGACTCTCCACAACGCAAAGACCGTGAAGGACCTCCGTTCTCGAATGGACTCGGATGTATCGCTCGCTCTCAAGAAAGCGAAGCTCATTAAGGTCCGGTTGGAAGCCTTAGACAGGGCTAATGCTGCTAATAGGAGCTTACCTGGCTGCGGACCCGGATCTTCGTCGGACCGGACCAGAACGTCGGTAGTCAACGGGCTGAGGAAGAAGTTGCAGGACTCTATGGAGAGCTTCAACAATCTGAGACAGGAGATCTCATCGGAATACAGAGATACCGTACAGCGGAGGTACTACACCGTCACCGGAGAAAATCCCGACGAGAAAACCATTGACCTACTGATCTCTACAGGGGAAAGCGAGACATTCTTGCAGAAAGCGATTCAAGAACAAGGAAGAGGCAGAGTTTTGGACACCATTAATGAGATTCAAGAGCGGCACGATGCAGTAAAAGATATGGAGAAGAACCTCAAGGAACTCCACCAGGTTTTCATGGACATGTCCGTGCTGGTGCAGGCTCAAGGAGAGCAACTCGACGACATCGAGAGCCAAATGGCAAGAGCTCATTCGTTCGTCAGAGGCGGAACGCAGGAATTGCATACGGCGAGGGTATATCAGAAAAATACGCGGAAATGGGTGATTATTTCAAGTGTTGTTTTCGTGATTGTCATCATTGTGATTGTTCTCATAATCGTTAGGCCTGGGAGTAAATAG | 894 | 49.44 | MNDLFSSRSFSRDRTGVEMTYSNSPTAVNLDKFFEDVESVKDELKELDDLYTRLKHSHEQSKTLHNAKTVKDLRSRMDSDVSLALKKAKLIKVRLEALDRANAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQEISSEYRDTVQRRYYTVTGENPDEKTIDLLISTGESETFLQKAIQEQGRGRVLDTINEIQERHDAVKDMEKNLKELHQVFMDMSVLVQAQGEQLDDIESQMARAHSFVRGGTQELHTARVYQKNTRKWVIISSVVFVIVIIVIVLIIVRPGSK | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1190775 | 1192115 | + | Bma003756.1 | Bma10g00132 | 89195 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma10g00132 | 297 | CDD | SynN | 30 | 187 | IPR006011 | GO:0016020 | |
Bma10g00132 | 297 | CDD | SNARE_syntaxin1-like | 199 | 259 | - | - | |
Bma10g00132 | 297 | Gene3D | - | 196 | 293 | - | - | |
Bma10g00132 | 297 | PANTHER | BNAA05G27280D PROTEIN | 8 | 290 | - | - | |
Bma10g00132 | 297 | Gene3D | - | 28 | 160 | - | - | |
Bma10g00132 | 297 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 200 | 262 | IPR000727 | - | |
Bma10g00132 | 297 | Coils | Coil | 125 | 149 | - | - | |
Bma10g00132 | 297 | SUPERFAMILY | t-snare proteins | 29 | 255 | IPR010989 | GO:0016020|GO:0016192 | |
Bma10g00132 | 297 | ProSitePatterns | Syntaxin / epimorphin family signature. | 206 | 245 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Bma10g00132 | 297 | Coils | Coil | 200 | 220 | - | - | |
Bma10g00132 | 297 | Coils | Coil | 30 | 57 | - | - | |
Bma10g00132 | 297 | PANTHER | SYNTAXIN | 8 | 290 | IPR045242 | - | |
Bma10g00132 | 297 | Pfam | SNARE domain | 236 | 288 | IPR000727 | - | |
Bma10g00132 | 297 | SMART | tSNARE_6 | 195 | 262 | IPR000727 | - | |
Bma10g00132 | 297 | Pfam | Syntaxin | 32 | 235 | IPR006011 | GO:0016020 | |
Bma10g00132 | 297 | SMART | SynN_4 | 25 | 151 | IPR006011 | GO:0016020 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma07g00353 | Bma-Chr7:4463222 | Bma10g00132 | Bma-Chr10:1190775 | 3.53E-124 | dispersed | |
Bma10g00132 | Bma-Chr10:1190775 | Bma11g00374 | Bma-Chr11:4077034 | 3.14E-125 | dispersed | |
Bma01g02014 | Bma-Chr1:74718270 | Bma10g00132 | Bma-Chr10:1190775 | 1.61E-91 | wgd | |
Bma10g00132 | Bma-Chr10:1190775 | Bma04g01535 | Bma-Chr4:51364686 | 2.70E-164 | wgd | |
Bma10g00132 | Bma-Chr10:1190775 | Bma04g00526 | Bma-Chr4:4618116 | 1.11E-151 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma10g00132 | K08486 | - | csv:101208931 | 465.307 |