Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00132 ATGAACGACTTGTTCTCTTCCCGGTCTTTCTCCCGCGATCGAACAGGCGTTGAGATGACATATTCGAATTCACCGACCGCCGTCAATCTCGACAAGTTCTTCGAGGACGTTGAGTCGGTGAAGGACGAGCTGAAGGAGCTCGATGATTTGTATACTCGACTGAAACACTCTCACGAGCAGAGCAAGACTCTCCACAACGCAAAGACCGTGAAGGACCTCCGTTCTCGAATGGACTCGGATGTATCGCTCGCTCTCAAGAAAGCGAAGCTCATTAAGGTCCGGTTGGAAGCCTTAGACAGGGCTAATGCTGCTAATAGGAGCTTACCTGGCTGCGGACCCGGATCTTCGTCGGACCGGACCAGAACGTCGGTAGTCAACGGGCTGAGGAAGAAGTTGCAGGACTCTATGGAGAGCTTCAACAATCTGAGACAGGAGATCTCATCGGAATACAGAGATACCGTACAGCGGAGGTACTACACCGTCACCGGAGAAAATCCCGACGAGAAAACCATTGACCTACTGATCTCTACAGGGGAAAGCGAGACATTCTTGCAGAAAGCGATTCAAGAACAAGGAAGAGGCAGAGTTTTGGACACCATTAATGAGATTCAAGAGCGGCACGATGCAGTAAAAGATATGGAGAAGAACCTCAAGGAACTCCACCAGGTTTTCATGGACATGTCCGTGCTGGTGCAGGCTCAAGGAGAGCAACTCGACGACATCGAGAGCCAAATGGCAAGAGCTCATTCGTTCGTCAGAGGCGGAACGCAGGAATTGCATACGGCGAGGGTATATCAGAAAAATACGCGGAAATGGGTGATTATTTCAAGTGTTGTTTTCGTGATTGTCATCATTGTGATTGTTCTCATAATCGTTAGGCCTGGGAGTAAATAG 894 49.44 MNDLFSSRSFSRDRTGVEMTYSNSPTAVNLDKFFEDVESVKDELKELDDLYTRLKHSHEQSKTLHNAKTVKDLRSRMDSDVSLALKKAKLIKVRLEALDRANAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQEISSEYRDTVQRRYYTVTGENPDEKTIDLLISTGESETFLQKAIQEQGRGRVLDTINEIQERHDAVKDMEKNLKELHQVFMDMSVLVQAQGEQLDDIESQMARAHSFVRGGTQELHTARVYQKNTRKWVIISSVVFVIVIIVIVLIIVRPGSK 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1190775 1192115 + Bma003756.1 Bma10g00132 89195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00132 297 CDD SynN 30 187 IPR006011 GO:0016020
Bma10g00132 297 CDD SNARE_syntaxin1-like 199 259 - -
Bma10g00132 297 Gene3D - 196 293 - -
Bma10g00132 297 PANTHER BNAA05G27280D PROTEIN 8 290 - -
Bma10g00132 297 Gene3D - 28 160 - -
Bma10g00132 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 200 262 IPR000727 -
Bma10g00132 297 Coils Coil 125 149 - -
Bma10g00132 297 SUPERFAMILY t-snare proteins 29 255 IPR010989 GO:0016020|GO:0016192
Bma10g00132 297 ProSitePatterns Syntaxin / epimorphin family signature. 206 245 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bma10g00132 297 Coils Coil 200 220 - -
Bma10g00132 297 Coils Coil 30 57 - -
Bma10g00132 297 PANTHER SYNTAXIN 8 290 IPR045242 -
Bma10g00132 297 Pfam SNARE domain 236 288 IPR000727 -
Bma10g00132 297 SMART tSNARE_6 195 262 IPR000727 -
Bma10g00132 297 Pfam Syntaxin 32 235 IPR006011 GO:0016020
Bma10g00132 297 SMART SynN_4 25 151 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00353 Bma-Chr7:4463222 Bma10g00132 Bma-Chr10:1190775 3.53E-124 dispersed
Bma10g00132 Bma-Chr10:1190775 Bma11g00374 Bma-Chr11:4077034 3.14E-125 dispersed
Bma01g02014 Bma-Chr1:74718270 Bma10g00132 Bma-Chr10:1190775 1.61E-91 wgd
Bma10g00132 Bma-Chr10:1190775 Bma04g01535 Bma-Chr4:51364686 2.70E-164 wgd
Bma10g00132 Bma-Chr10:1190775 Bma04g00526 Bma-Chr4:4618116 1.11E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00132 K08486 - csv:101208931 465.307