Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00166 ATGGCTCCTGGAGGTGGTGCTTATGAAGAAGTTCTACAATCCCACCCGTCGGTTTCTGATTATAACATAACGGCAACAAAACCAGACATAAGTTCTTCTTTTACAAAACTTTCAGTCGGTAGACGCGAAATATCTTCGACCAGTGGTGTTCACGAGTTGCTCCTGTGTCCTGTCTGTCTAAATTTGATGTACCCTCCAATTCATCAGTGCCCAAATGGCCACACACTCTGTTCCAATTGCAAGATCAAAGTGCACAACTGTTGCCCAACTTGCCGAAACGAACTAGGCGATATTAGGTGCCTGGCTTTGGAAAAGGTGGCTGAATCTTTAGAACTTCCATGCCAATATCAGAGCTTAGGGTGTAGTGATATTTTTCCGTACTACTCGAAGCTTAAACACGAGCAAAGCTGCCGATTCCGGCCCTTCAATTGCCCCTATGCTGGCTCTGAATGCTCCGTTATGGGCGACATTCCAACCCTCGTTGCACATCTCAAGGACGATCACAAGGTCGACATGCACGACGGTTGTACGTTCAACCATCGATACGTCAAATCAAATCCCGACGAAGTGGAAAACGCCACTTGGATGCTTACAGTCTTCAATTGCTTTGGACGGCAATTCTGCTTACACTTTGAGGCGTTCCTTTTAGGCACTTTACCAGTTTATATGGCGTTTGTACGGTTTATGGGAGACGACAACGAAGCAAAGAAATTCAACTACAGCTTAGAAGTTGGTGGCTATGGTAGAAAGCTAATATGGCAGGGAATTCCGAGGAGCATTCGCCAAGATCATATGAAAGTACGCGATAGCCAAGATGGTCTCATTATTCAGAAGAATCTCGCGCTCTACTTTTCCGGCGGAGACAAGAAAGAGCTCAAGTTGCGCGTAACGGGCCGAATTTGGAAAGAAGACTGA 915 46.01 MAPGGGAYEEVLQSHPSVSDYNITATKPDISSSFTKLSVGRREISSTSGVHELLLCPVCLNLMYPPIHQCPNGHTLCSNCKIKVHNCCPTCRNELGDIRCLALEKVAESLELPCQYQSLGCSDIFPYYSKLKHEQSCRFRPFNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKSNPDEVENATWMLTVFNCFGRQFCLHFEAFLLGTLPVYMAFVRFMGDDNEAKKFNYSLEVGGYGRKLIWQGIPRSIRQDHMKVRDSQDGLIIQKNLALYFSGGDKKELKLRVTGRIWKED 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1436823 1438461 - Bma003793.1 Bma10g00166 89229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00166 304 SUPERFAMILY TRAF domain-like 109 301 - -
Bma10g00166 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Bma10g00166 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 303 - -
Bma10g00166 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 163 IPR013083 -
Bma10g00166 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 303 - -
Bma10g00166 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bma10g00166 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Bma10g00166 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 164 297 IPR008974 GO:0005515
Bma10g00166 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Bma10g00166 304 SUPERFAMILY RING/U-box 49 95 - -
Bma10g00166 304 CDD RING-HC_SIAHs 56 92 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00429 Bma-Chr3:3263017 Bma10g00166 Bma-Chr10:1436823 4.27E-111 dispersed
Bma10g00166 Bma-Chr10:1436823 Bma10g01302 Bma-Chr10:46420593 2.72E-145 dispersed
Bma10g00166 Bma-Chr10:1436823 Bma06g01156 Bma-Chr6:48463528 2.28E-157 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00166 K04506 - rcu:8260973 540.421