Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma10g00168 | ATGGAGCTCGCTCTCAGCCTCAAACCTTTCTCCTTCCTCGATAAGACCCCGAAAATCAACGAGGATTTGGGGTTAGGGTGTGGGAGTGGCTTCTCTGCAACTGAAGAAGAGAAAATGGAGGCCGACAATGGTGGAGCTTCGGATCCGCCTCTTCAGCTTCGTCTTCTTCCTTCTGCTCCTGTTCCTCGTCGGATTCCTTTCCCTTGGCTTACCGACCACATGATATCTGAATCAGGATCTTCGGATGGGTCGGGAAGAGCTCTAGACGTGAATCAGCCACCGGCAGCAACGTCTGCGGCGGAGGACGGCGACGATAGGGCTGCTCTATCGTCTCCAAACAGCGCCGTTTCTTCATTTCCCGTGGTCGGAAAAGGCGGATCGATAGGAAGAAGCAAGAGGGAGTTGGAAATGGAAACCGAAAGAACGACCTCCAGAGCGAGCGACGAAGAAAACAACGGCCTTTGTAGAAAAAAGCTCCGGCTGTCCAAAGAGCAGTCGGCTTTTCTCGAAGAAAGCTTCAAAGAACACAGTACTTTAAATCCAAAGCAAAAGCTCGGTCTAGCTAAAAGGTTGAACCTTCGTCCTCGGCAAGTAGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACGAAGTTGAAGCAGACAGAAGTGGATTGCGAATATTTAAAAAGATGTTGCGAGAAATTAACGGAAGAGAACAGAAGATTGCAGAAGGAACTTCAAGATCTCAGAGCCTTGAAAGCATCCCACCCTTTCTGCATGCAACTTCCAGCCACCACTCTCACCATGTGCCCCTCCTGCGACCGAGGTCGCCACCACCACCACCACTAA | 828 | 50.48 | MELALSLKPFSFLDKTPKINEDLGLGCGSGFSATEEEKMEADNGGASDPPLQLRLLPSAPVPRRIPFPWLTDHMISESGSSDGSGRALDVNQPPAATSAAEDGDDRAALSSPNSAVSSFPVVGKGGSIGRSKRELEMETERTTSRASDEENNGLCRKKLRLSKEQSAFLEESFKEHSTLNPKQKLGLAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEKLTEENRRLQKELQDLRALKASHPFCMQLPATTLTMCPSCDRGRHHHHH | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1446294 | 1447427 | - | Bma003795.1 | Bma10g00168 | 89231 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma10g00168 | 275 | Coils | Coil | 218 | 248 | - | - | |
Bma10g00168 | 275 | Pfam | HD-ZIP protein N terminus | 21 | 124 | IPR006712 | GO:0005634 | |
Bma10g00168 | 275 | MobiDBLite | consensus disorder prediction | 76 | 151 | - | - | |
Bma10g00168 | 275 | MobiDBLite | consensus disorder prediction | 129 | 151 | - | - | |
Bma10g00168 | 275 | ProSiteProfiles | 'Homeobox' domain profile. | 156 | 212 | IPR001356 | GO:0003677 | |
Bma10g00168 | 275 | Pfam | Homeobox associated leucine zipper | 212 | 246 | IPR003106 | GO:0006355|GO:0043565 | |
Bma10g00168 | 275 | CDD | homeodomain | 156 | 213 | IPR001356 | GO:0003677 | |
Bma10g00168 | 275 | Gene3D | - | 160 | 210 | - | - | |
Bma10g00168 | 275 | MobiDBLite | consensus disorder prediction | 30 | 51 | - | - | |
Bma10g00168 | 275 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 35 | 268 | - | - | |
Bma10g00168 | 275 | SMART | HOX_1 | 154 | 216 | IPR001356 | GO:0003677 | |
Bma10g00168 | 275 | Coils | Coil | 132 | 152 | - | - | |
Bma10g00168 | 275 | SUPERFAMILY | Homeodomain-like | 156 | 221 | IPR009057 | - | |
Bma10g00168 | 275 | Pfam | Homeodomain | 156 | 210 | IPR001356 | GO:0003677 | |
Bma10g00168 | 275 | PANTHER | - | 35 | 268 | - | - | |
Bma10g00168 | 275 | SMART | halz | 212 | 255 | IPR003106 | GO:0006355|GO:0043565 | |
Bma10g00168 | 275 | ProSitePatterns | 'Homeobox' domain signature. | 187 | 210 | IPR017970 | GO:0000981|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00478 | Bma-Chr1:3922706 | Bma10g00168 | Bma-Chr10:1446294 | 3.22E-45 | dispersed | |
Bma03g01175 | Bma-Chr3:17104644 | Bma10g00168 | Bma-Chr10:1446294 | 5.85E-68 | dispersed | |
Bma05g00746 | Bma-Chr5:43873071 | Bma10g00168 | Bma-Chr10:1446294 | 7.19E-70 | dispersed | |
Bma06g00325 | Bma-Chr6:6236831 | Bma10g00168 | Bma-Chr10:1446294 | 1.39E-67 | dispersed | |
Bma09g00866 | Bma-Chr9:47779827 | Bma10g00168 | Bma-Chr10:1446294 | 2.51E-43 | dispersed | |
Bma10g00168 | Bma-Chr10:1446294 | Bma12g00657 | Bma-Chr12:27787469 | 1.73E-71 | dispersed | |
Bma11g00651 | Bma-Chr11:11580372 | Bma10g00168 | Bma-Chr10:1446294 | 3.55E-15 | dispersed | |
Bma10g00168 | Bma-Chr10:1446294 | Bma15g00444 | Bma-Chr15:4823091 | 5.94E-81 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57902 | PF04618 | HD-ZIP_N | 1.50E-09 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma10g00168 | K09338 | - | qsu:112028347 | 365.925 |