Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00168 ATGGAGCTCGCTCTCAGCCTCAAACCTTTCTCCTTCCTCGATAAGACCCCGAAAATCAACGAGGATTTGGGGTTAGGGTGTGGGAGTGGCTTCTCTGCAACTGAAGAAGAGAAAATGGAGGCCGACAATGGTGGAGCTTCGGATCCGCCTCTTCAGCTTCGTCTTCTTCCTTCTGCTCCTGTTCCTCGTCGGATTCCTTTCCCTTGGCTTACCGACCACATGATATCTGAATCAGGATCTTCGGATGGGTCGGGAAGAGCTCTAGACGTGAATCAGCCACCGGCAGCAACGTCTGCGGCGGAGGACGGCGACGATAGGGCTGCTCTATCGTCTCCAAACAGCGCCGTTTCTTCATTTCCCGTGGTCGGAAAAGGCGGATCGATAGGAAGAAGCAAGAGGGAGTTGGAAATGGAAACCGAAAGAACGACCTCCAGAGCGAGCGACGAAGAAAACAACGGCCTTTGTAGAAAAAAGCTCCGGCTGTCCAAAGAGCAGTCGGCTTTTCTCGAAGAAAGCTTCAAAGAACACAGTACTTTAAATCCAAAGCAAAAGCTCGGTCTAGCTAAAAGGTTGAACCTTCGTCCTCGGCAAGTAGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACGAAGTTGAAGCAGACAGAAGTGGATTGCGAATATTTAAAAAGATGTTGCGAGAAATTAACGGAAGAGAACAGAAGATTGCAGAAGGAACTTCAAGATCTCAGAGCCTTGAAAGCATCCCACCCTTTCTGCATGCAACTTCCAGCCACCACTCTCACCATGTGCCCCTCCTGCGACCGAGGTCGCCACCACCACCACCACTAA 828 50.48 MELALSLKPFSFLDKTPKINEDLGLGCGSGFSATEEEKMEADNGGASDPPLQLRLLPSAPVPRRIPFPWLTDHMISESGSSDGSGRALDVNQPPAATSAAEDGDDRAALSSPNSAVSSFPVVGKGGSIGRSKRELEMETERTTSRASDEENNGLCRKKLRLSKEQSAFLEESFKEHSTLNPKQKLGLAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEKLTEENRRLQKELQDLRALKASHPFCMQLPATTLTMCPSCDRGRHHHHH 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1446294 1447427 - Bma003795.1 Bma10g00168 89231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00168 275 Coils Coil 218 248 - -
Bma10g00168 275 Pfam HD-ZIP protein N terminus 21 124 IPR006712 GO:0005634
Bma10g00168 275 MobiDBLite consensus disorder prediction 76 151 - -
Bma10g00168 275 MobiDBLite consensus disorder prediction 129 151 - -
Bma10g00168 275 ProSiteProfiles 'Homeobox' domain profile. 156 212 IPR001356 GO:0003677
Bma10g00168 275 Pfam Homeobox associated leucine zipper 212 246 IPR003106 GO:0006355|GO:0043565
Bma10g00168 275 CDD homeodomain 156 213 IPR001356 GO:0003677
Bma10g00168 275 Gene3D - 160 210 - -
Bma10g00168 275 MobiDBLite consensus disorder prediction 30 51 - -
Bma10g00168 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 268 - -
Bma10g00168 275 SMART HOX_1 154 216 IPR001356 GO:0003677
Bma10g00168 275 Coils Coil 132 152 - -
Bma10g00168 275 SUPERFAMILY Homeodomain-like 156 221 IPR009057 -
Bma10g00168 275 Pfam Homeodomain 156 210 IPR001356 GO:0003677
Bma10g00168 275 PANTHER - 35 268 - -
Bma10g00168 275 SMART halz 212 255 IPR003106 GO:0006355|GO:0043565
Bma10g00168 275 ProSitePatterns 'Homeobox' domain signature. 187 210 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00478 Bma-Chr1:3922706 Bma10g00168 Bma-Chr10:1446294 3.22E-45 dispersed
Bma03g01175 Bma-Chr3:17104644 Bma10g00168 Bma-Chr10:1446294 5.85E-68 dispersed
Bma05g00746 Bma-Chr5:43873071 Bma10g00168 Bma-Chr10:1446294 7.19E-70 dispersed
Bma06g00325 Bma-Chr6:6236831 Bma10g00168 Bma-Chr10:1446294 1.39E-67 dispersed
Bma09g00866 Bma-Chr9:47779827 Bma10g00168 Bma-Chr10:1446294 2.51E-43 dispersed
Bma10g00168 Bma-Chr10:1446294 Bma12g00657 Bma-Chr12:27787469 1.73E-71 dispersed
Bma11g00651 Bma-Chr11:11580372 Bma10g00168 Bma-Chr10:1446294 3.55E-15 dispersed
Bma10g00168 Bma-Chr10:1446294 Bma15g00444 Bma-Chr15:4823091 5.94E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57902 PF04618 HD-ZIP_N 1.50E-09 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00168 K09338 - qsu:112028347 365.925