Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00201 ATGGAGAATTGCAGGAAATCCCCATTAAAGCCGTGGAAGAAAGGTCCATCTAGAGGCAAAGGGGGCCCTCAGAATGCCTCGTGTGAGTACCGAGGCGTTCGACAAAGAACTTGGGGAAAGTGGGTGGCTGAAATTAGAGAGCCGAAAAAGAGAACTCGATTATGGTTAGGTTCATTTGCTACGGCTGAAGAAGCTGCTATGGCGTACGACGAGGCTGCCCGGAGACTTTACGGTCCGGATGCTTACCTCAATCTTCCACACCTGCAACCGAGCTCTATATCTCCGATCAAATCGCAAAGATTCAAATGGTTTCCATCGAAAAATTTTATTTCCATGTTTCCATCTTGTGGGTTGCTCAATATAAATGCTCAACCTAGTGTTCATGTGATTCATCAGAGGCTTCAAGAGCTAAAACAAAATGGAGTTCTCAAACAAAACCCTTCTAATTCATCTTCCTGCAATTCAAAATTCGACAGTCAGGTAATCGGCAATAAACCCTTTGCAGAAAATCATGGAGGGAAAGATAAGGTCAGGGATGTCTCAACGGAAATGATGATTAGAGTAGAAGAGAAGCCACAGATTGATCTAAATGAGTTTCTTCAACAGCTAGGAATACTGAAAGATAACAATAACAGGTCTGAAGGAGCTGATGAAGCTACAGCAAGTTCAATGGCATCCGAATCTTCATTTAAAGACGACGGATATGAACTCGGCAACTTCACTGACAAGAGCTACAACTGGGATGCTCTGATTGAAATGCATGGCATTGCAGATCAAGCAACTGAAACTGTCAATTTCCAGCTATATGATGTCAATGAAGAACTGAGCTTCCCTTCCTCCATCTGGAACTTTTGA 855 43.16 MENCRKSPLKPWKKGPSRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPSSISPIKSQRFKWFPSKNFISMFPSCGLLNINAQPSVHVIHQRLQELKQNGVLKQNPSNSSSCNSKFDSQVIGNKPFAENHGGKDKVRDVSTEMMIRVEEKPQIDLNEFLQQLGILKDNNNRSEGADEATASSMASESSFKDDGYELGNFTDKSYNWDALIEMHGIADQATETVNFQLYDVNEELSFPSSIWNF 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1794138 1794992 - Bma003828.1 Bma10g00201 89264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00201 284 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Bma10g00201 284 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Bma10g00201 284 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Bma10g00201 284 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Bma10g00201 284 MobiDBLite consensus disorder prediction 1 27 - -
Bma10g00201 284 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Bma10g00201 284 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Bma10g00201 284 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Bma10g00201 284 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Bma10g00201 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 281 - -
Bma10g00201 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02343 Bma-Chr1:81023072 Bma10g00201 Bma-Chr10:1794138 3.70E-35 dispersed
Bma03g00239 Bma-Chr3:1811209 Bma10g00201 Bma-Chr10:1794138 1.09E-26 dispersed
Bma05g00143 Bma-Chr5:4315509 Bma10g00201 Bma-Chr10:1794138 8.84E-35 dispersed
Bma08g01076 Bma-Chr8:49798943 Bma10g00201 Bma-Chr10:1794138 8.64E-34 dispersed
Bma10g00201 Bma-Chr10:1794138 Bma01g01424 Bma-Chr1:24099779 1.55E-24 dispersed
Bma10g00201 Bma-Chr10:1794138 Bma04g00223 Bma-Chr4:1900041 2.89E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57906 PF00847 AP2 1.90E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00201 - - qsu:112016049 399.438