Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00204 ATGAACAACTTGACTGTTAATACTGAAGATTCTTTTGTGAATTTGCTTGAACTTGCTGCAAATGATGATCTCGAGGGGTTCAAAAGATTAGTGGAGCTTGATCCTTCTGGTATTGATGAAGTTGGCTTGTGGTATTGCCGTCAGAAAGGCTTGAAGCAAATGGTGAATGGGCATCGAACCCCATTAATGGTTGCGGCTACATATGGTAGCATCAAAGTTATGAAGCTGATTTTGTCATTATCTGATGCATATATTAACTGTGCGGCTGGATTCGATAAAACCACTGCCCTTCATTGTGCTGCCTCGGGTTATTCTGGTGAAGGCAAGCCGATGGCTTTGACAGGGATAGTAAATTCAAATTCTCCTCCTCTTATGTCGTCGCCTCAAAAGATGTCTTCTGCTTTAGAGTTAGCCTTTTCACCTATGAATTCGAAATTGAATGATCTTCACATCTCTTCTTCGTCGGAGAAGAAAGAATACCCTATTGACCCGTCTCTTCCTGACATCAAAAACAGCATATACTCAACCGATGAATTTCGAATGTATTCGTTTAAGGTACGGCCTTGTTCTCGTGCGTATTCACACGACTGGACGGAGTGCCCTTTTGTCCATCCAGGAGAAAATGCTCGAAGAAGGGATCCGAGGAAGTACCATTACAGCTGCGTTCCTTGTCCAGATTTCCGAAAAGGGGCTTGTAGACGCGGAGATTTGTGTGAATACGCACATGGGGTTTTCGAGTGTTGGCTGCACCCAGCTCAGTATAGAACACGGCTTTGCAAGGACGGAACTAGTTGTGCTAGAAGAGTTTGCTTCTTTGCCCACACTGATGAGGAGCTTCGCCCTTTGTACGTATCTACTGGCTCAGCCGTTCTGTCTCCTCGGTCTGGTTCTTCTGGTCCTCCGGTAATGGATTATGCCTCTGCCATGAATATCTTGCCTGGCTCCCCATCTTCAATGTCTGTAATGTCTCCCACTCCCTTCACTCCCATGTCTCCTTCGGGTGCCCACTCTTCTTTGGGTTGGCCTCAGCCGAATGTTCCGGCATTGCATCTTCCCGGAAGCAATCTTCAGTCGAGTCGCCTGAGATCATCCATTAATGCAAGAGACATTTTATCGGAGGATTTTGATTTACTTCCGGAGTTTGATGTTCAGCAACAACAGCTTCTGAATGATCTATCTCGTCTCTCTCAACTAAATATGGGTTCTAATTCTTTCAGTCGCAAGCCCATCTCGCCAATCAGCTCCCGTTTGTCAATATTGGCTCAGAGAGAGAAACAGCAACAGTTTCGCAGCCTCAGCTCTCGGGAACTTGGTGCAAATTCTTTGAACATTGGTGGGTCGGCAACTAATTCTTGGTCGAAATGGGGACCGTCCGAAGGAAATCCCACCAATGAATATGGTAAGCTCCGTAGATCTTCTTCGTTTGAGTTAGGAAATAATGGGGAAGAGCCCGATTTATCTTGGGTTCAATCTCTAGTCAAAGAATCTCCTACTGATGTGAAGGAAAGGCAAGCTATGTCTTTTTCTGGCAACGCAAACTCCGGCAATCCATCGAATGTAAGTACCACGACGGACGCAACCGAGCATGCCGTTTTGGGAGCGTGGATTGAACAAATGCAGCTTGATAATCTTGTAGCTCAGCAAAATTAA 1650 45.64 MNNLTVNTEDSFVNLLELAANDDLEGFKRLVELDPSGIDEVGLWYCRQKGLKQMVNGHRTPLMVAATYGSIKVMKLILSLSDAYINCAAGFDKTTALHCAASGYSGEGKPMALTGIVNSNSPPLMSSPQKMSSALELAFSPMNSKLNDLHISSSSEKKEYPIDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTSCARRVCFFAHTDEELRPLYVSTGSAVLSPRSGSSGPPVMDYASAMNILPGSPSSMSVMSPTPFTPMSPSGAHSSLGWPQPNVPALHLPGSNLQSSRLRSSINARDILSEDFDLLPEFDVQQQQLLNDLSRLSQLNMGSNSFSRKPISPISSRLSILAQREKQQQFRSLSSRELGANSLNIGGSATNSWSKWGPSEGNPTNEYGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTDVKERQAMSFSGNANSGNPSNVSTTTDATEHAVLGAWIEQMQLDNLVAQQN 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1811749 1813826 - Bma003831.1 Bma10g00204 89267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00204 549 Gene3D - 219 281 - -
Bma10g00204 549 ProSiteProfiles Zinc finger C3H1-type profile. 223 245 IPR000571 GO:0046872
Bma10g00204 549 Gene3D - 4 109 IPR036770 -
Bma10g00204 549 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 408 546 - -
Bma10g00204 549 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 223 243 IPR000571 GO:0046872
Bma10g00204 549 PANTHER UNKEMPT FAMILY MEMBER 408 546 IPR045234 -
Bma10g00204 549 PANTHER UNKEMPT FAMILY MEMBER 125 407 IPR045234 -
Bma10g00204 549 PANTHER UNKEMPT FAMILY MEMBER 1 105 IPR045234 -
Bma10g00204 549 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 125 407 - -
Bma10g00204 549 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 105 - -
Bma10g00204 549 MobiDBLite consensus disorder prediction 448 468 - -
Bma10g00204 549 SUPERFAMILY Ankyrin repeat 14 102 IPR036770 -
Bma10g00204 549 SMART c3hfinal6 218 244 IPR000571 GO:0046872
Bma10g00204 549 SMART c3hfinal6 253 276 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02062 Bma10g00204 CCT
Bma01g02062 Bma10g00204 ECH
Bma04g01517 Bma10g00204 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00204 Bma-Chr10:1811749 Bma13g00133 Bma-Chr13:1338580 3.98E-18 dispersed
Bma10g00204 Bma-Chr10:1811749 Bma04g01517 Bma-Chr4:51197814 7.36E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57907 PF00642 zf-CCCH 1.00E-05 CL0537 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00204 - - jre:108981448 597.816