Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00218 ATGGCCGACTACGACCTCACCCAACGTATCGCTCCCAATCTCGATCGTCACCTCGTGTTCCCGCTGCTTGAATTTCTTCAGGAACGGCAGCTTCACCCCGATGAGCAGATCCTCAAGTCTAAGATCGAGCTTCTCAATAAGACCAACATGGTCGACTACGCAATGGACTATCATAAATCGCTTTACCATTCCGAAGAAGTGCCTCAGGATATGGTGGAGAGGAGAGCTGAGGTGGTAGCGCGGCTTAAGGCTTTGGAAGAAGGTGCGGCGCCTATTGTTGCTTTTCTTCAGAATGCCTCTGCGGTTCAGGAGTTGAGGGCTGATAAGCATTATAATATTCAGATGCTTAATGATCGTTATCAGATCGGTCCGAACCAGATTGAGGCACTGTATCAATATGCTAAGTTTCAGTTCGAGTGTGGAAACTACTCTGGAGCTGCTGATTATTTGTATCAGTACAGGGCCTTGTGCACAAATAGCGAAAGGAGTTTGAGTGCATTATGGGGAAAGCTGGCTGCAGAAATATTGATGCAGAATTGGGACATTGCTCTGGAAGAACTTAATCGATTGAAAGAAATTATTGACTCAAAGAGTTTTCAATCACCAATGAGTCAGGTCCAAAGCCGAATATGGCTAATGCATTGGAGTCTGTTCATCTTTTTTAATCATGATAATGGAAGAACACATATTATTGACCTATTTTATCAAGACAAGTATTTAAATGCCATTCAAACTAATGCTCCCCATCTGTTACGCTACCTGGCCACTGCATTCATCGTGATATTAAATGATCCATTTCTTGGTAAACGAGTTGAAGATGGAAACTATTCAACTGTTCCATTGAGAGATGAGTTTCTAGAGAATGCACGTTTGTTCATCTTTGAGACGTATTGCCAAATACATTGGCGGATAGAAATGAGCGTTCTTGCTGAGAAATTGAACTTGAATTATGAGGATGCTGAGAGATGGATTGCAAATCTTATCCGAGGCTCAAAGCTCGACGCCAGGATTGATTCAAAATCGGGAACTGTCATCATGGAACCCAATCATCCAAATGTGTATGAGCAGCTGATAGACCACACCAAGGCATTATCAGGGCAAACTTACAAGTTAGTCAGTCAGCTTCTAGAACATTCCCAGACTCAGGCAGCTCGATAA 1158 43.09 MADYDLTQRIAPNLDRHLVFPLLEFLQERQLHPDEQILKSKIELLNKTNMVDYAMDYHKSLYHSEEVPQDMVERRAEVVARLKALEEGAAPIVAFLQNASAVQELRADKHYNIQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFQSPMSQVQSRIWLMHWSLFIFFNHDNGRTHIIDLFYQDKYLNAIQTNAPHLLRYLATAFIVILNDPFLGKRVEDGNYSTVPLRDEFLENARLFIFETYCQIHWRIEMSVLAEKLNLNYEDAERWIANLIRGSKLDARIDSKSGTVIMEPNHPNVYEQLIDHTKALSGQTYKLVSQLLEHSQTQAAR 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1990824 1993772 - Bma003848.1 Bma10g00218 89281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00218 385 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 280 364 - -
Bma10g00218 385 ProSiteProfiles PCI domain profile. 185 351 IPR000717 -
Bma10g00218 385 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 260 383 - -
Bma10g00218 385 SMART eIF3_N_2 5 137 IPR019010 -
Bma10g00218 385 PIRSF Transl_init_eIF3e 259 385 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bma10g00218 385 PIRSF Transl_init_eIF3e 1 264 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bma10g00218 385 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Bma10g00218 385 Gene3D - 263 381 - -
Bma10g00218 385 SUPERFAMILY TPR-like 120 192 IPR011990 GO:0005515
Bma10g00218 385 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 377 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bma10g00218 385 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 260 - -
Bma10g00218 385 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 260 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bma10g00218 385 Pfam PCI domain 277 347 IPR000717 -
Bma10g00218 385 SUPERFAMILY Winged helix DNA-binding domain 280 351 IPR036390 -
Bma10g00218 385 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 260 383 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bma10g00218 385 SMART PINT_4 280 364 IPR000717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01097 Bma-Chr6:47766618 Bma10g00218 Bma-Chr10:1990824 1.03E-139 dispersed
Bma06g01098 Bma-Chr6:47772109 Bma10g00218 Bma-Chr10:1990824 4.14E-114 dispersed
Bma08g00977 Bma-Chr8:48833089 Bma10g00218 Bma-Chr10:1990824 7.88E-36 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00218 K03250 - rcu:8268657 684.485