Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00236 ATGGATAGCAGAACAGTGAAGTTTGGTACAGACGATGTTAGTAAAATCGTTAACGTAATGCCGAGCTTCGTTTCTCAGATCACAACGCCCAATCCAATTGGAACGGAGGGAAACAATATTTCTTCATCTCGAATGACAGACTTCAGAGCGATTGAGCAGTCTCTTGGATTTCGCGCAGAGAACGCTGTTGAACTTTCGAGAAATGCTGCTTATAATAAAATGAAGTCGAGTAATCCAATTCTAAGTACAAATATCCAATTTGATGCCTTAACTAAGACATTAGCTCTGCCAAAAGACATGCATCTCAATCCCATTTCAACATCCGTTCCTCAACGAGAAAGCTGGGAGGAGTCTAACACGGTGGATGCCAGCCCCCGGACTGATACTTCAACCGATGACACCGATGAGAAAAATCAGAGGTTTGAAAGGAATCAATTAATTGTCGGTGGAGGCTCCGATTCAAATAACACGTCGAGAGAAAAATCTGGGGATCAAAAGACATTGCGCAGACTTGCTCAAAATCGAGAAGCTGCTAGAAAAAGCAGGCTGAGGAAAAAGGCTTATGTACAGCAGCTAGAGAGCAGCCGGTTGAAGCTAACCCAGCTCGAGCAGGAACTCCAGCGAGCACGACAACAGGGGATATTTATTTCGGGTTCTGGAGATCAATCGCATTCGATTAGTGGAAATGGTGCGCTAGCCTTCGATGCAGAATATTCGCGTTGGCTAGAAGAGCATAACAGGCTAGTAAACGAGCTGAGAACGGGTGTTAATTCTCACGTGGGCGACGCCGAACTTCGTATTATTGTCGACGAAGTCACTGCACATTTTGATGATATTTTCAGGCTGAAAGGCATCGCAGCCAAAACTGACGTTTTCCACATTTTGTCCGGAATGTGGAAAACCCCCGCCGAGAGGTGTTTCATGTGGATTGGTGGATTTCGCTCGTCTGAGCTTCTCAAGCTTCTTGTGAGTCAATTGGAACCTCTGACGGAGCAACAGGTGATAGACATCTGCAACCTGCAACAATCGTCCCAACAGGCCGAAGATGCGCTGTCCCAAGGCATGGAGGCATTGCAGCAATCCTTAGCCGAGACATTGGCCAGCGGCTCCCCTGCATCTTCGGCCCCGTCCGGTAACGTAGCAAACTACATGGGCCAGATGGCTATGGCCATGGGAAAGTTAGGAACTCTCGAAGGCTTCCTTCGCCAGGCTGATAATCTGCGGCAACAAACGCTCCAACAAATGCACCGTGTTTTGACAATTCGGCAATCCGCCCGTGCTTTTTTGGCGATAAACGACTACTTTTCCCGACTCCGAGCCCTCAGTTCTCTCTGGCTGGCCAGACCGCGAGAGTGA 1356 48.08 MDSRTVKFGTDDVSKIVNVMPSFVSQITTPNPIGTEGNNISSSRMTDFRAIEQSLGFRAENAVELSRNAAYNKMKSSNPILSTNIQFDALTKTLALPKDMHLNPISTSVPQRESWEESNTVDASPRTDTSTDDTDEKNQRFERNQLIVGGGSDSNNTSREKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISGSGDQSHSISGNGALAFDAEYSRWLEEHNRLVNELRTGVNSHVGDAELRIIVDEVTAHFDDIFRLKGIAAKTDVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQVIDICNLQQSSQQAEDALSQGMEALQQSLAETLASGSPASSAPSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRVLTIRQSARAFLAINDYFSRLRALSSLWLARPRE 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2162224 2165795 + Bma003868.1 Bma10g00236 89299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00236 451 Coils Coil 185 212 - -
Bma10g00236 451 Pfam bZIP transcription factor 166 206 IPR004827 GO:0003700|GO:0006355
Bma10g00236 451 MobiDBLite consensus disorder prediction 102 169 - -
Bma10g00236 451 MobiDBLite consensus disorder prediction 128 142 - -
Bma10g00236 451 CDD bZIP_HBP1b-like 166 218 - -
Bma10g00236 451 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 164 208 IPR004827 GO:0003700|GO:0006355
Bma10g00236 451 ProSiteProfiles DOG1 domain profile. 231 448 IPR025422 GO:0006351|GO:0043565
Bma10g00236 451 PANTHER TRANSCRIPTION FACTOR TGA9 57 451 - -
Bma10g00236 451 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 169 184 IPR004827 GO:0003700|GO:0006355
Bma10g00236 451 Pfam Seed dormancy control 249 324 IPR025422 GO:0006351|GO:0043565
Bma10g00236 451 Gene3D - 165 214 - -
Bma10g00236 451 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 57 451 - -
Bma10g00236 451 SMART brlzneu 162 225 IPR004827 GO:0003700|GO:0006355
Bma10g00236 451 SUPERFAMILY Leucine zipper domain 166 209 IPR046347 GO:0003700|GO:0006355
Bma10g00236 451 MobiDBLite consensus disorder prediction 104 127 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01459 Bma10g00236 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00015 Bma-Chr3:219471 Bma10g00236 Bma-Chr10:2162224 3.10E-165 dispersed
Bma03g00419 Bma-Chr3:3186899 Bma10g00236 Bma-Chr10:2162224 2.33E-180 dispersed
Bma04g00464 Bma-Chr4:3905809 Bma10g00236 Bma-Chr10:2162224 6.04E-127 dispersed
Bma04g01507 Bma-Chr4:51100526 Bma10g00236 Bma-Chr10:2162224 5.90E-39 dispersed
Bma06g00131 Bma-Chr6:1756413 Bma10g00236 Bma-Chr10:2162224 2.06E-85 dispersed
Bma10g00236 Bma-Chr10:2162224 Bma15g00081 Bma-Chr15:916771 2.71E-153 dispersed
Bma10g00236 Bma-Chr10:2162224 Bma04g01459 Bma-Chr4:50090361 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57910 PF14144 DOG1 1.80E-29 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00236 K14431 - qsu:112036206 653.669