Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00247 ATGGAGTTTGACCCACTGTTCTTGCATTGCTGCAAATGGGGAAGAACGACGAAGAGCAATCGCTGCCACCCACTGTGGGATCGGAGCCCACGAACCAGAATGTGGGTGGCCGATGTGGTTATGGGTGGGAGAGAATTCGGAGGATCACTCAAGCTACTTTCGCATTATGCAGATCATCAAATTGTAGCAAGTTTCAATGTTGAGAAGTCTGTTTCTTTTCTTGAAGAGCATGTCCTGCAGCTTGAGGATGATATTTTCGAAGAGATTCCCGTACCTTCAGCGAAGGTCATTATCTTATCTATGGAACCATTAATTGGATCGAATTTAACGGAAGTAGTGTTTGCAGTTGACCCAGAGAGAAGTTATCCAGAGATTCCCGAAACATCCTTAAGTTTGATCAGATCAACTTTTGAAACTCTGGTTCTTAATCGTCCACCTCTTCGCCTCACTACAGACCTGTTAGGAAAACCCGTTTCTTTCGAGGTGCTGAAATTCCGTGGAGGAATTACTATAATTCCCCCGCAAAGTGCATTTCTTTTGCAAAAAGTGCAAATCTATTTCAACTTCACATTAAACTTTTCTATTTACCAAATTCAATCAAATTTCAACAAACTTACAAGCCAGTTGAAGTCGGCACTACGTTTAGCTCCCTATGAGAACATGTATATACGCTTATCGAACACAAGAGGTTCGACTGTTGGCGCACCCACTATTGTTCAGTGCTCTGTTCTGCTGTCAGTCGGGAATACTCCATCAACACGAAGGCTAAAGCAGCTGGCTCAGACCATCACTGGTTTGCACTCGAAAAACCTCGGCCTGAACAATACGGAATTTGGAAGGGTTAAGCAAGTTCGCCTTTCATCGATTCTTAATCACTCGCTCAGTGGTGGTTATGGAAATGGCTCTACTTCATCCCCTTCTCCTGCTCCTGATCATAGTTCCCATCACCGCCGCCACCACCACCGCCACCACCACCCTCAGATAAGCTCTCCGCCCCCCAAGAGAAGTTATGAAAATGGTCCACCTGGCGATCAAATAGGTGCCTCTGCCCCGGAAGATGGCTCACTTGCCCCTCAGATAAGCTCTCCGCCCCCCAAGAGAAGTTATGAAGTGAAGCCACGGAGCAAGGTAAGAAAACGGAATCATTTAGCACCAGCTCCTTCACCAGATATTTCTCCGAAATATGCTGCAGCTTCACCACGAGCTCAAACAAACCCACGGCCACCAGCTTCTCCTACAGTTCTGGCATCAAGTCCGCTTCCTAACGTAATTTACGCCCATCTTCAACCCCCATCTGTAAGTGATCATGGAAAAGACACGACCCCATCAGTTGCACCATCTCCATCTCCATCTCCATCTCCATCTCCATCTCTGGGTAAGTTCAGCGGTGGAATTTAG 1398 46.64 MEFDPLFLHCCKWGRTTKSNRCHPLWDRSPRTRMWVADVVMGGREFGGSLKLLSHYADHQIVASFNVEKSVSFLEEHVLQLEDDIFEEIPVPSAKVIILSMEPLIGSNLTEVVFAVDPERSYPEIPETSLSLIRSTFETLVLNRPPLRLTTDLLGKPVSFEVLKFRGGITIIPPQSAFLLQKVQIYFNFTLNFSIYQIQSNFNKLTSQLKSALRLAPYENMYIRLSNTRGSTVGAPTIVQCSVLLSVGNTPSTRRLKQLAQTITGLHSKNLGLNNTEFGRVKQVRLSSILNHSLSGGYGNGSTSSPSPAPDHSSHHRRHHHRHHHPQISSPPPKRSYENGPPGDQIGASAPEDGSLAPQISSPPPKRSYEVKPRSKVRKRNHLAPAPSPDISPKYAAASPRAQTNPRPPASPTVLASSPLPNVIYAHLQPPSVSDHGKDTTPSVAPSPSPSPSPSPSLGKFSGGI 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2278758 2281550 - Bma003879.1 Bma10g00247 89310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00247 465 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 50 451 - -
Bma10g00247 465 PANTHER F20B24.21 50 451 - -
Bma10g00247 465 MobiDBLite consensus disorder prediction 295 310 - -
Bma10g00247 465 MobiDBLite consensus disorder prediction 295 465 - -
Bma10g00247 465 MobiDBLite consensus disorder prediction 313 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00247 - - - jre:109008135 414.461
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma04g01448 Bma10g00247 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02694 Bma-Chr1:84395474 Bma10g00247 Bma-Chr10:2278758 4.87E-112 dispersed
Bma04g01695 Bma-Chr4:53221436 Bma10g00247 Bma-Chr10:2278758 1.38E-50 dispersed
Bma10g00247 Bma-Chr10:2278758 Bma04g01448 Bma-Chr4:49662585 5.72E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g462 . . . . Bpe04g01368 . Bma04g01448 Bma10g00247 . Cmo14g00512 Cma03g00161 Cma07g01106 . Car07g01080 Sed03g2128 Cpe10g01098 . Bhi03g02525 Tan03g0529 Cmetu08g0751 . Hepe04g0540 . . Cla04g00601 Cam04g0591 Cec04g0639 Cco04g0689 Clacu04g0641 Cmu04g0640 Cre04g0627 . . Cone13ag0657 Cone19ag0654 Lsi01g01756 Csa04g01897 Chy08g00222 Cme04g02117 Blo07g01208 . Bda03g01510 Bda05g01005 . Bpe02g00032 . . Sed02g0799 . Cmo07g01153 . Cma14g00506 . Car14g00464 Cpe03g00446 Cpe19g00242 Bhi11g02799 Tan08g1266 Cmetu04g1536 . . . . Cla10g01555 Cam10g1604 Cec10g1652 Cco10g1618 Clacu10g1619 Cmu10g2374 Cre10g1754 Lsi03g01619 Csa03g03701 . Cme08g01444
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma02g00592 . 78 544 C3H Transcription Factor Family AT2G31510 77.1 1.2e-227 785.8
Bma02g00592 . 47 523 C3H Transcription Factor Family AT2G31770 57.5 5.3e-168 587.8
Bma02g00592 . 61 545 C3H Transcription Factor Family AT2G31760 56.0 2.8e-166 582.0
Bma02g01189 . 1 195 C3H Transcription Factor Family AT3G03550 55.1 1.7e-53 206.8
Bma01g01081 . 1 217 C3H Transcription Factor Family AT3G02290 55.9 6.6e-67 250.8
Bma01g01095 . 1 217 C3H Transcription Factor Family AT3G02290 55.9 1.1e-66 250.0
Bma14g01059 . 2 147 C3H Transcription Factor Family AT3G02290 56.1 8.4e-38 154.1
Bma11g00486 . 1 302 C3H Transcription Factor Family AT1G11020 76.9 2.1e-135 478.8
Bma10g00653 . 39 213 C3H Transcription Factor Family AT1G50440 69.7 2.5e-66 248.8
Bma10g00693 . 54 213 C3H Transcription Factor Family AT1G50440 74.4 7.3e-66 247.3
Bma04g00005 . 1 151 C3H Transcription Factor Family AT1G22510 74.8 1.8e-60 229.2
Bma11g00888 . 1 150 C3H Transcription Factor Family AT1G22510 68.4 4.3e-54 208.0
Bma01g01081 . 1 217 C3H Transcription Factor Family AT5G38895 55.7 1.8e-65 246.5
Bma01g01095 . 1 217 C3H Transcription Factor Family AT5G38895 55.2 8.9e-65 244.2
Bma15g00848 . 19 225 C3H Transcription Factor Family AT1G19310 62.0 1.0e-72 270.0
Bma01g02302 BCT 34 225 C3H Transcription Factor Family AT1G19310 66.8 8.7e-72 266.9
Bma03g01075 . 27 232 C3H Transcription Factor Family AT1G19310 58.0 1.6e-65 246.1
Bma04g00198 BCT 22 158 C3H Transcription Factor Family AT1G19310 57.3 2.2e-38 156.0
Bma04g00005 . 1 151 C3H Transcription Factor Family AT1G72175 75.5 6.7e-60 226.9
Bma11g00888 . 5 150 C3H Transcription Factor Family AT1G72175 68.9 5.6e-51 197.2
Bma14g01646 . 8 172 C3H Transcription Factor Family AT1G26800 51.5 6.7e-47 184.1
Bma09g00052 . 1 291 C3H Transcription Factor Family AT2G22120 63.3 1.6e-107 386.3
Bma09g00054 . 1 294 C3H Transcription Factor Family AT2G22120 62.9 2.3e-106 382.5
Bma03g00018 . 1 174 C3H Transcription Factor Family AT5G07040 59.8 4.9e-45 177.6
Bma09g00653 . 1 386 C3H Transcription Factor Family AT1G18470 71.6 4.9e-161 564.3
Bma01g00153 . 1 419 C3H Transcription Factor Family AT1G18470 56.9 1.4e-131 466.5
Bma03g01542 . 124 210 C3H Transcription Factor Family AT4G33565 71.1 1.3e-37 154.1
Bma02g00592 . 47 523 C3H Transcription Factor Family AT2G31770 57.5 5.3e-168 587.8
Bma02g00592 . 61 545 C3H Transcription Factor Family AT2G31760 56.0 2.8e-166 582.0
Bma13g01130 CCT 15 265 C3H Transcription Factor Family AT5G55970 68.9 5.8e-98 354.4
Bma14g00672 CCT 1 218 C3H Transcription Factor Family AT5G55970 70.1 1.9e-93 339.3
Bma13g01130 CCT 35 324 C3H Transcription Factor Family AT4G26580 68.5 7.7e-117 417.2
Bma14g00672 CCT 1 286 C3H Transcription Factor Family AT4G26580 67.9 2.1e-114 409.1
Bma14g01579 . 10 481 C3H Transcription Factor Family AT5G01960 67.9 8.4e-169 590.1
Bma01g01704 . 1 303 C3H Transcription Factor Family AT5G01960 56.6 4.1e-75 278.9
Bma12g00872 BCT,CCT 1 150 C3H Transcription Factor Family AT2G04240 51.9 2.2e-37 152.1
Bma11g00304 BCT 3 246 C3H Transcription Factor Family AT5G19430 51.9 2.9e-60 228.8
Bma07g00282 BCT 1 221 C3H Transcription Factor Family AT5G19430 52.3 2.3e-57 219.2
Bma11g00304 BCT 1 246 C3H Transcription Factor Family AT5G12310 58.0 1.0e-60 230.3
Bma07g00282 BCT 1 221 C3H Transcription Factor Family AT5G12310 50.8 2.4e-54 209.1
Bma04g01270 . 65 224 C3H Transcription Factor Family AT5G05830 59.9 1.4e-52 203.0
Bma04g01279 . 60 219 C3H Transcription Factor Family AT5G05830 59.9 1.4e-52 203.0
Bma03g00273 . 22 208 C3H Transcription Factor Family AT5G05830 57.5 5.8e-51 197.6
Bma01g01081 . 1 217 C3H Transcription Factor Family AT5G15790 57.8 4.6e-68 254.6
Bma01g01095 . 1 217 C3H Transcription Factor Family AT5G15790 57.3 1.7e-67 252.7
Bma14g01059 . 2 147 C3H Transcription Factor Family AT5G15790 57.0 3.1e-40 162.2
Bma03g00136 . 1 274 C3H Transcription Factor Family AT3G55530 75.1 3.7e-109 391.3
Bma15g00564 . 1 273 C3H Transcription Factor Family AT1G63900 75.2 4.1e-116 414.5
Bma02g01167 . 12 397 C3H Transcription Factor Family AT2G44580 56.1 3.7e-123 438.3
Bma15g00848 . 23 150 C3H Transcription Factor Family AT1G74990 55.3 4.5e-39 157.5
Bma01g02302 BCT 34 154 C3H Transcription Factor Family AT1G74990 61.8 1.7e-38 155.6
Bma01g00903 . 10 314 C3H Transcription Factor Family AT5G20910 63.3 2.1e-108 389.0
Bma03g01075 . 30 233 C3H Transcription Factor Family AT2G23780 64.0 9.3e-74 273.5
Bma15g00848 . 16 226 C3H Transcription Factor Family AT2G23780 61.6 2.1e-73 272.3
Bma01g02302 BCT 33 235 C3H Transcription Factor Family AT2G23780 56.2 3.4e-60 228.4
Bma01g02694 . 1 321 C3H Transcription Factor Family AT3G10810 55.3 6.7e-85 311.6
Bma10g00247 BCT 56 293 C3H Transcription Factor Family AT3G10810 59.7 4.7e-70 262.3
Bma05g01183 . 1 157 C3H Transcription Factor Family AT1G63840 52.2 2.1e-43 172.2
Bma04g00881 . 1 159 C3H Transcription Factor Family AT1G63840 52.8 4.8e-43 171.0
Bma04g00888 . 1 159 C3H Transcription Factor Family AT1G63840 52.1 1.4e-42 169.5
Bma14g00604 . 1 134 C3H Transcription Factor Family AT1G63840 61.9 5.8e-41 164.1
Bma07g01660 . 1 141 C3H Transcription Factor Family AT1G63840 58.2 2.9e-40 161.8
Bma05g00824 . 1 155 C3H Transcription Factor Family AT1G63840 51.0 2.1e-38 155.6
Bma14g01932 BCT 11 364 C3H Transcription Factor Family AT1G68070 67.4 4.7e-130 461.1
Bma12g00096 . 53 355 C3H Transcription Factor Family AT1G68070 52.9 1.4e-86 316.6
Bma02g01042 . 47 376 C3H Transcription Factor Family AT1G68070 50.5 2.3e-84 309.3
Bma15g00027 BCT 471 576 C3H Transcription Factor Family AT1G68070 72.6 2.0e-43 173.3
Bma01g01300 . 1 397 C3H Transcription Factor Family AT1G80400 54.0 1.3e-113 406.8
Bma02g00041 . 63 369 C3H Transcription Factor Family AT1G80400 60.8 9.0e-112 400.6
Bma15g00389 . 29 417 C3H Transcription Factor Family AT1G80400 54.6 4.6e-108 388.3
Bma14g01765 . 68 187 C3H Transcription Factor Family AT2G18650 63.6 4.4e-37 152.5
Bma02g00592 . 78 544 C3H Transcription Factor Family AT2G31510 77.1 1.2e-227 785.8
Bma01g02016 . 5 167 C3H Transcription Factor Family AT2G35910 58.2 2.2e-48 189.1
Bma10g00166 . 1 304 C3H Transcription Factor Family AT2G41980 76.7 4.1e-141 497.7
Bma06g01156 . 29 302 C3H Transcription Factor Family AT2G41980 75.1 1.4e-125 446.0
Bma10g01302 . 63 349 C3H Transcription Factor Family AT2G41980 68.4 6.1e-113 404.1
Bma03g00429 . 281 473 C3H Transcription Factor Family AT2G41980 77.7 6.0e-92 334.3
Bma02g01102 . 29 248 C3H Transcription Factor Family AT2G41980 58.4 1.7e-86 316.2
Bma12g01203 . 63 214 C3H Transcription Factor Family AT2G41980 80.3 1.2e-73 273.5
Bma10g00026 . 10 220 C3H Transcription Factor Family AT3G09770 66.4 2.3e-76 282.7
Bma01g00453 . 1 167 C3H Transcription Factor Family AT1G15100 50.9 4.3e-38 154.5
Bma06g01093 . 1 170 C3H Transcription Factor Family AT1G15100 50.6 5.6e-38 154.1
Bma14g01434 . 149 603 C3H Transcription Factor Family AT3G26730 56.2 5.7e-141 498.4
Bma08g00169 . 382 679 C3H Transcription Factor Family AT3G47990 71.2 1.4e-125 446.0
Bma14g00158 . 7 188 C3H Transcription Factor Family AT5G17600 51.0 9.0e-47 184.5
Bma12g00489 . 13 402 C3H Transcription Factor Family AT3G18930 50.1 2.2e-81 299.7
Bma03g00946 . 15 235 C3H Transcription Factor Family AT5G66070 71.5 6.7e-77 283.9
Bma09g00185 . 26 230 C3H Transcription Factor Family AT5G66070 76.7 3.8e-72 268.1
Bma06g00083 . 14 235 C3H Transcription Factor Family AT5G66070 67.6 6.5e-72 267.3
Bma01g00153 . 1 472 C3H Transcription Factor Family AT1G73950 54.7 7.4e-144 507.3
Bma09g00653 . 5 386 C3H Transcription Factor Family AT1G73950 63.7 6.0e-138 487.6
Bma12g00940 . 5 315 C3H Transcription Factor Family AT1G73950 52.3 3.4e-117 418.7
Bma12g00937 . 5 317 C3H Transcription Factor Family AT1G73950 51.8 4.7e-114 408.3
Bma14g01932 BCT 14 258 C3H Transcription Factor Family AT2G01735 63.8 9.3e-83 303.5
Bma05g00809 . 53 259 C3H Transcription Factor Family AT2G01735 50.2 6.8e-49 191.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001978 2 2 3 3 3 2 3 1 2 2 2 2 3 2 2 3 2 2 3 2 1 1 2 2 2 2 2 5 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00247 Bma_Chr10 FPKM 2.1142 2.167539 3.718824 4.632841 4.527139 4.536158 4.630716 2.850256 2.730825 3.171362