Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00270 ATGGAACCAACTGCTGGCACAGCTACTAGATCCAGCCCCGACGGGCGTTTACCAGACGACACTGGGCTCGATTCGCTCCAATTTCGCGAAGAAATTCAAAGATTGATTACTGCATCGCCGGAGAATGGTACTTCATTCACTGCGCTTCTGGAACTCCCGGCGACGCAGGCGGTGGAACTCCTGAATTCGTCAAACTCTGATGGAGTCTCGAAGAGAGTGACTCTCTTCAACGGCGACCACAAACCTTTTTTCCATCCTGTCAGTGTAAATTCGAACGCTCCTCCCATCTCATCCCCGGTACAGCTTGCCGCAAAGTTTCCCAGCTTCACTGGGGAGCAGTCCCCGGAGGCGACAAGTTCTGTAGCTACGAACTCGAATGCAAATTTAGAGAAGGTGAAGAGCGAGCCGGTCGCCGAGGCCAACTCGACTCCCAACTCGTTACGGCCATCTTTGGATCCGTCATTGGAGAACGCGAATCAGAAGTCAGCAAAGAGAAAGGAGCCCGAGAAGAAGGGCAAAGGATCAGCAAAGAAGAGCAAAACCGAAAAATCGGAAAATTCTGAAAAGCTTCCATACGTTCACGTCCGAGCTCGACGTGGTGAAGCTACGGATAGCCATAGCCTGGCAGAGAGAGCTAGGAGAGAGAAAATAAATGCTCGTATGAAGTTGCTTCAAGAGCTGGTCCCCGGATGCAATAAGGTTTCGGGAACAGCTTTAGTTCTTGATGAAATCATCAATCACGTGCAGTCCTTGCAGCGCCAAGTCGAGTTTTTATCAATGAGACTTGCTGCTGTCAATCCAAGAATTGATTTTAACCTCGACAGTTTGTTTGCTGCAGAAGTAAGTTTACATAATCATTGTTTCTTTGTTGCTTAA 876 48.86 MEPTAGTATRSSPDGRLPDDTGLDSLQFREEIQRLITASPENGTSFTALLELPATQAVELLNSSNSDGVSKRVTLFNGDHKPFFHPVSVNSNAPPISSPVQLAAKFPSFTGEQSPEATSSVATNSNANLEKVKSEPVAEANSTPNSLRPSLDPSLENANQKSAKRKEPEKKGKGSAKKSKTEKSENSEKLPYVHVRARRGEATDSHSLAERARREKINARMKLLQELVPGCNKVSGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFAAEVSLHNHCFFVA 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2454758 2457695 - Bma003902.1 Bma10g00270 89333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00270 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 251 IPR011598 GO:0046983
Bma10g00270 291 MobiDBLite consensus disorder prediction 138 158 - -
Bma10g00270 291 MobiDBLite consensus disorder prediction 109 131 - -
Bma10g00270 291 SMART finulus 207 257 IPR011598 GO:0046983
Bma10g00270 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 270 IPR036638 GO:0046983
Bma10g00270 291 MobiDBLite consensus disorder prediction 1 24 - -
Bma10g00270 291 CDD bHLH_AtBPE_like 191 276 - -
Bma10g00270 291 PANTHER TRANSCRIPTION FACTOR BHLH60 8 281 - -
Bma10g00270 291 MobiDBLite consensus disorder prediction 109 191 - -
Bma10g00270 291 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 8 281 IPR024097 GO:0006355
Bma10g00270 291 Coils Coil 241 261 - -
Bma10g00270 291 Gene3D - 198 271 IPR036638 GO:0046983
Bma10g00270 291 MobiDBLite consensus disorder prediction 159 191 - -
Bma10g00270 291 Pfam Helix-loop-helix DNA-binding domain 205 252 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00462 Bma10g00270 CCT
Bma04g01514 Bma10g00270 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01514 Bma-Chr4:51170854 Bma10g00270 Bma-Chr10:2454758 3.33E-142 dispersed
Bma10g00270 Bma-Chr10:2454758 Bma15g00648 Bma-Chr15:9352134 3.01E-46 dispersed
Bma10g00191 Bma-Chr10:1706177 Bma10g00270 Bma-Chr10:2454758 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57913 PF00010 HLH 7.40E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00270 - - zju:107432409 314.309