Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00281 ATGTCAACAATATCACCTGCAACTCCAGCTTGGCTCAACAGTGGCGACAACGCGTGGCAATTGACGTCCGCTACGCTTGTCGGTCTGCAAAGTATGCCGGGTCTGGTGATTCTCTACGGCAGCATCGTGAAGAAGAAATGGGCGGTGAACTCGGCTTTCATGGCCCTCTACGCCTTCGCCGCCACCCTCATATGCTGGGTTCTGGTCAGCTACCGTATGGCCTTTGGGGACGAATTGCTTCCACTCTGGGGCAAAGGGGCGCCTTCTCTCGGCCAATACTACCTGAGGAACCGAGCCCAAATCCCGGAGAGCACGCACTATCGAGAAGATGGGTTGATTGAGTCTCAGAAGATCGAGCCCTTTTATCCAATGGCGACGCTAGTTTACTTCCAGTTTACATTTGCCGCAATTACGCTTATTTTACTGGCGGGGTCTGTTCTTGGGCGGATGAACATCAAAGCTTGGATGGCTTTTGTCCCTCTTTGGCTAATTTTCTCCTACACGGTCGGAGCCTACAGTTTATGGGGCGGAGGGTTTCTCTTTCACTGGGGCGTCATCGATTATTCCGGCGGCTATGTCATCCACCTCTCCTCCGGGATCGCCGGCTTCACCGCTGCTTATTGGGTTGGTCCGAGAATAAGGAGCGATAGGGAGAGATTTCCACCCAATAACGTCTTGCTCACGCTCGCCGGGGCTGGGCTGCTTTGGATGGGCTGGTCGGGATTCAACGGCGGTGCTCCGCGGGCAGCGAATGTTGTGGCCTCAATTGCTGTGTTGAACACAAACATAAGTGCAGCGACGAGCCTTCTTGTGTGGACCACTTTGGACGTGATTGTTTTCGGAAAACCATCGGTGATCGGAGCAGTTCAGGGCATGATCACCGGCCTCGCTTGCGTCACTCCGGGAGCAGGAGTCGTTCAACCATGGGCCGCCATAGTAATGGGAGTCCTCGCTGGCAGCATTCCATGGGTGTCTATGATGATTCTTCACAAAAAGTCCACTCTTCTACAAAAGGTGGACGACACTCTAGGAGTGTTTTACACACATGGAGTTGCAGGAATTTTAGGCGGTCTTCTAACAGGGCTCCTGGCAGAGCCATCGCTGTGCAGTCTCAGCCTCCCAGTGACCAACACAAGAGGCGCATTTTATGGAGATGGTGGGGGCATGCTGTTTTTCAAACAATTGGTTGCGGCCATGTTTATTATAGGGTGGAACATAGTCTCCACCACAATCATACTCTTGTTTATAAGAGTTTTCATTCCGTTGAGAATGTCCGACGAGGAGCTGCTGGTCGGAGACGATGCGGCTCACGGGGAGGAGGCTTATGCTCTTTGGGGAGACGGAGAGAAATTCGACCCGAATAAACACGGGTGGAATATGGGTGCTCATGCAGAGGAATTGGCTCCCTCTCCCTATGTCCATGGTGCTAGAGGGGTAACCATTGTTTTGTAA 1452 52.75 MSTISPATPAWLNSGDNAWQLTSATLVGLQSMPGLVILYGSIVKKKWAVNSAFMALYAFAATLICWVLVSYRMAFGDELLPLWGKGAPSLGQYYLRNRAQIPESTHYREDGLIESQKIEPFYPMATLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSLWGGGFLFHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIRSDRERFPPNNVLLTLAGAGLLWMGWSGFNGGAPRAANVVASIAVLNTNISAATSLLVWTTLDVIVFGKPSVIGAVQGMITGLACVTPGAGVVQPWAAIVMGVLAGSIPWVSMMILHKKSTLLQKVDDTLGVFYTHGVAGILGGLLTGLLAEPSLCSLSLPVTNTRGAFYGDGGGMLFFKQLVAAMFIIGWNIVSTTIILLFIRVFIPLRMSDEELLVGDDAAHGEEAYALWGDGEKFDPNKHGWNMGAHAEELAPSPYVHGARGVTIVL 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2530463 2532298 + Bma003914.1 Bma10g00281 89344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00281 483 ProSitePatterns Ammonium transporters signature. 187 212 IPR018047 GO:0008519|GO:0016020|GO:0072488
Bma10g00281 483 TIGRFAM amt: ammonium transporter 16 442 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bma10g00281 483 PRINTS Rhesus blood group protein signature 131 147 IPR002229 GO:0005887
Bma10g00281 483 PRINTS Rhesus blood group protein signature 257 279 IPR002229 GO:0005887
Bma10g00281 483 PRINTS Rhesus blood group protein signature 350 366 IPR002229 GO:0005887
Bma10g00281 483 PRINTS Rhesus blood group protein signature 226 244 IPR002229 GO:0005887
Bma10g00281 483 PRINTS Rhesus blood group protein signature 312 330 IPR002229 GO:0005887
Bma10g00281 483 Gene3D Ammonium transporter AmtB like domains 1 445 IPR029020 -
Bma10g00281 483 PANTHER AMMONIUM TRANSPORTER MEP2 4 480 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bma10g00281 483 Pfam Ammonium Transporter Family 18 442 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bma10g00281 483 PANTHER AMMONIUM TRANSPORTER 2 4 480 - -
Bma10g00281 483 SUPERFAMILY Ammonium transporter 11 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00281 Bma-Chr10:2530463 Bma10g00340 Bma-Chr10:3212655 0 dispersed
Bma10g00281 Bma-Chr10:2530463 Bma02g00930 Bma-Chr2:49092498 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00281 K03320 - zju:107430906 841.262