Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00293 ATGGCCGGCAAGGGTGAAGGACCGGCGATTGGAATTGATCTCGGAACAACGTACTCTTGCGTCGGAGTATGGCAACACGACCGCGTTGAGATCATCGCTAACGACCAGGGTAACCGAACGACCCCTTCCTACGTCGGATTCACCGATACAGAGCGGTTGATAGGTGATGCGGCCAAGAACCAGGTCGCCATGAATCCTTTGAACACCGTCTTCGATGCTAAGAGGTTGATTGGTCGGAGATTCTCCGATGGGCCTGTTCAAAGTGACGTTAAATTGTGGCCTTTTAAGGTTATTCCTGGTTCTGGCGACAAGCCCATGATAATTGTAGACTACAAGGGCGAAGAAAAACAATTTTCTGCTGAAGAAATTTCTTCCATGGTCCTCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGAACAACAATAAAAAATGCAGTCGTCACCGTCCCTGCTTACTTTAATGACTCTCAGCGACAGGCCACCAAGGATGCTGGTGTTATTGCCGGTCTGAATGTCATGCGCATAATTAATGAGCCTACAGCTGCTGCGATTGCTTATGGCCTTGATAAGAAAGCCACCAGCGTTGGTGAAAAAAATGTCTTGATCTTTGACCTTGGCGGCGGTACCTTTGATGTCTCTCTCCTGACTATCGAGGAGGGAATTTTTGAGGTTAAAGCCACTGCCGGAGACACCCACCTTGGTGGTGAAGATTTTGATAACAGAATGGTGAACCACTTCGTTCAGGAATTCAAGAGGAAGAACAAGAAAGACATTAGTGGCAATCCTCGGGCTCTTAGGAGATTGAGGACCTCGTGTGAGAGGGCAAAGAGAACTCTCTCATCCACTGCTCAGACCACCATAGAAATTGATTCCTTGTACGAAGGCATTGATTTTTACTCGACCATCACGCGTGCTAGATTTGAGGAGATGAACATGGATCTCTTCAGAAAGTGTATGGAACCAGTAGAAAAGTGTCTGAGAGATGCTAAGATGGACAAGAGCACCGTCCACGACGTCGTACTGGTTGGTGGGTCTACCAGAATACCTAAGGTCCAGCAGCTCTTGCAGGATTTCTTCAATGGCAAAGAGCTTTGCAAGAGCATTAACCCTGATGAGGCTGTTGCCTATGGGGCTGCTGTTCAGGCTGCTATCTTGAGTGGAGAGGGCAATGAAAAGGTGCAAGATCTCTTGCTTTTGGATGTCACTCCTCTCTCACTTGGATTGGAAACCGCTGGTGGTGTCATGACTGTATTGATACCCAGAAACACTACAATTCCCACAAAGAAGGAGCAAGTCTTCTCTACCTACTCCGACAACCAGCCCGGAGTTTTGATCCAGGTGTATGAAGGTGAAAGAACAAGAACCCGTGATAATAACTTGCTAGGTAAATTTGAGCTCTCAGGCATTCCTCCGGCCCCAAGGGGTGTTCCGCAAATCACTGTCTGTTTCGACATTGATGCCAATGGCATTTTGAACGTGTCCGCGGAGGACAAGACCACAGGCCAAAAGAACAAGATCACCATTACAAATGACAAGGGAAGATTGTCTAAAGAGGACATAGAGAAAATGGTACAGGAAGCAGAGAAGTACAAATCTGAAGACGAGGAGCACAAAAAGAAGGTCGAATCCAAGAATGCACTGGAAAATTATTCGTACAACATGAGGAACACAATCAAGGACGAGAAGATTGGAGCCAAGCTTCCTCCAGCTGACAAGAAGAAGATCGAAGACGCCATTGAGCAGGCCATTCAGTGGTTGGACAGCAACCAACTGGCAGAAGCTGATGAATTCGATGACAAGATGAAAGAACTGGAGAGCATCTGCAACCCAATCATTGCCAAGATGTACCAAGGTGCGGGTGGTGAACCTGGCGCAGGCATGGACGATGACGATGAGGTTCCTGCTGCCAGCCGAGGTGGTGCTGGCGCTGGACCTAAGATCGAGGAAGTTGACTAA 1959 47.88 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSDGPVQSDVKLWPFKVIPGSGDKPMIIVDYKGEEKQFSAEEISSMVLIKMREIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEEMNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVESKNALENYSYNMRNTIKDEKIGAKLPPADKKKIEDAIEQAIQWLDSNQLAEADEFDDKMKELESICNPIIAKMYQGAGGEPGAGMDDDDEVPAASRGGAGAGPKIEEVD 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2671676 2674120 + Bma003926.3 Bma10g00293 89356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00293 652 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 628 - -
Bma10g00293 652 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Bma10g00293 652 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Bma10g00293 652 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Bma10g00293 652 PRINTS 70kDa heat shock protein signature 58 66 - -
Bma10g00293 652 PRINTS 70kDa heat shock protein signature 36 48 - -
Bma10g00293 652 PRINTS 70kDa heat shock protein signature 396 415 - -
Bma10g00293 652 PRINTS 70kDa heat shock protein signature 8 21 - -
Bma10g00293 652 PRINTS 70kDa heat shock protein signature 209 219 - -
Bma10g00293 652 PRINTS 70kDa heat shock protein signature 337 353 - -
Bma10g00293 652 PRINTS 70kDa heat shock protein signature 146 166 - -
Bma10g00293 652 PRINTS 70kDa heat shock protein signature 369 389 - -
Bma10g00293 652 PRINTS 70kDa heat shock protein signature 477 493 - -
Bma10g00293 652 PANTHER HEAT SHOCK PROTEIN 70KDA 1 628 IPR013126 GO:0005524|GO:0140662
Bma10g00293 652 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Bma10g00293 652 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Bma10g00293 652 Coils Coil 521 541 - -
Bma10g00293 652 Gene3D - 71 126 - -
Bma10g00293 652 MobiDBLite consensus disorder prediction 618 652 - -
Bma10g00293 652 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Bma10g00293 652 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Bma10g00293 652 Gene3D - 192 366 - -
Bma10g00293 652 Gene3D - 10 384 - -
Bma10g00293 652 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Bma10g00293 652 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Bma10g00293 652 Gene3D - 546 619 IPR029048 -
Bma10g00293 652 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Bma10g00293 652 Gene3D Actin; Chain A, domain 4 235 318 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00660 Bma10g00293 CCT
Bma01g01879 Bma10g00293 CCT
Bma04g00660 Bma10g00293 ECH
Bma01g01879 Bma10g00293 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00124 Bma-Chr3:948990 Bma10g00293 Bma-Chr10:2671676 0 dispersed
Bma07g00731 Bma-Chr7:19203020 Bma10g00293 Bma-Chr10:2671676 0 dispersed
Bma08g00994 Bma-Chr8:49032753 Bma10g00293 Bma-Chr10:2671676 0 dispersed
Bma10g00293 Bma-Chr10:2671676 Bma13g00506 Bma-Chr13:9709869 0 dispersed
Bma13g00698 Bma-Chr13:19664215 Bma10g00293 Bma-Chr10:2671676 2.02E-163 dispersed
Bma05g00839 Bma-Chr5:45774111 Bma10g00293 Bma-Chr10:2671676 0 transposed
Bma12g00262 Bma-Chr12:3458273 Bma10g00293 Bma-Chr10:2671676 0 transposed
Bma01g00660 Bma-Chr1:6017630 Bma10g00293 Bma-Chr10:2671676 4.87E-60 transposed
Bma06g01034 Bma-Chr6:47156609 Bma10g00293 Bma-Chr10:2671676 0 transposed
Bma01g01879 Bma-Chr1:69104163 Bma10g00293 Bma-Chr10:2671676 0 wgd
Bma10g00293 Bma-Chr10:2671676 Bma04g00660 Bma-Chr4:6354896 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00293 K03283 - rcu:8279580 1222.22