Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00298 ATGGAATACGATGATCGCTTCAGACACTCTAAGAGACAAAAATATGATTGTCTTCTGTTTGATCTTGATGATACTCTGTATCCCCTGAGTTCAGGTCTTGCGGCAGGATGCCTCAAAAATATAAAAGGTAAGCTCTTTGCAGATTATATGATTGAAATGCTTGGCATAGAGAAGAGCAAAATCCCAGACTACTGCAACTTACTGTACAAGCACTATGGAACAACAATGGCTGGCCTGAGGGCAATTGGCTATGACTTCGACTACGATGAATATCACAGTTTTGTCCATGGAAGGCTACCTTACGAGAATCTAAAACCAGATGCTGTTTTGAGGAGTCTTCTACTCAGCCTTCCTTTCAGAAAAGTTATCTTCACAAATGCAGACAAGATCCATGCAGCTAAAGTGCTTGAGAAGCTTGGATTAGAAGATTGTTTTGAAGGGATTATATGCTTTGAGACTCTAAATCCTTCCCACAAAACTAGTGTTTCCGATGATGAAGATGACATTGAGTTTTTAGGAGCACGCAATGCCAACATTGCCACTCCATTTTTTGACATAATTGGCCATTTCACTAACCCAATTCTCGGGTCGGTGCTGCCTGAGACGCCCATTATTTGCAAACCGTCTACAATCGCCATCGAACAAGCTCTCGAAGCTGCAGAAATCGATCCTCAAAGAACATTGTTTTTCGAGGATAGCGTGCGGAACATACAAGCCGGGAAGCTCGTAGGCCTTGACACAGTGCTGGGGGCAGGAGACATCGTGCGGGTGAGCGTAAAGGGTACAAAGACTGGCTGGATGAGCATGAGCCGGAACTGGGGCCAGAACTGGCAGTCCAACGCCGTCTTGGTCGGCCAGTCCCTTTCCTTCAGAATAACCGGCAGCGACAGACGCACCTCCACATCGTGGAACGTGGCTCCATCCAATTGGCAGTTCGGCCAAACTTTCGCCGGGAAGAATTTCCGCGTCTAA 972 46.3 MEYDDRFRHSKRQKYDCLLFDLDDTLYPLSSGLAAGCLKNIKGKLFADYMIEMLGIEKSKIPDYCNLLYKHYGTTMAGLRAIGYDFDYDEYHSFVHGRLPYENLKPDAVLRSLLLSLPFRKVIFTNADKIHAAKVLEKLGLEDCFEGIICFETLNPSHKTSVSDDEDDIEFLGARNANIATPFFDIIGHFTNPILGSVLPETPIICKPSTIAIEQALEAAEIDPQRTLFFEDSVRNIQAGKLVGLDTVLGAGDIVRVSVKGTKTGWMSMSRNWGQNWQSNAVLVGQSLSFRITGSDRRTSTSWNVAPSNWQFGQTFAGKNFRV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2731295 2737906 - Bma003932.2 Bma10g00298 89361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00298 323 Gene3D - 86 262 IPR023214 -
Bma10g00298 323 SUPERFAMILY HAD-like 17 249 IPR036412 -
Bma10g00298 323 Pfam Expansin C-terminal domain 248 307 IPR007117 -
Bma10g00298 323 SFLD Haloacid Dehalogenase 10 253 - -
Bma10g00298 323 SFLD C1.5.3: 5'-Nucleotidase Like 10 253 IPR010237 -
Bma10g00298 323 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 1 250 - -
Bma10g00298 323 PRINTS Expansin/Lol pI family signature 266 280 IPR007118 GO:0005576
Bma10g00298 323 PRINTS Expansin/Lol pI family signature 304 318 IPR007118 GO:0005576
Bma10g00298 323 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 1 250 - -
Bma10g00298 323 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 250 318 IPR007117 -
Bma10g00298 323 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 16 249 IPR010237 -
Bma10g00298 323 SUPERFAMILY PHL pollen allergen 249 317 IPR036749 -
Bma10g00298 323 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 204 249 IPR006439 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01861 Bma10g00298 CCT
Bma01g01861 Bma10g00298 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00789 Bma-Chr4:8937796 Bma10g00298 Bma-Chr10:2731295 5.22E-62 dispersed
Bma07g01546 Bma-Chr7:50971041 Bma10g00298 Bma-Chr10:2731295 4.27E-65 dispersed
Bma10g00298 Bma-Chr10:2731295 Bma11g00114 Bma-Chr11:1110498 7.89E-44 dispersed
Bma01g01861 Bma-Chr1:68203700 Bma10g00298 Bma-Chr10:2731295 5.08E-127 wgd
Bma10g00298 Bma-Chr10:2731295 Bma04g00671 Bma-Chr4:6450942 1.42E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00298 K07025 K18551 jre:109006806 387.497