Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00308 ATGGCGGAGGGTTTTGATGGCTGCCATATCCCACAACAAAGCCGAAGGGAAAAACTACGGATCCTCACAGCCCAGAACCACCCTCCTTGTTTGGAACCCAGCCTCAATCGTCATCTGTGTGTAGGATTACACCCTCTGTACGATCCGCCGTCTCTTACATCCTCCGATTTGCTAACGTGCGCCTCTGCCAATATCCAAGACTTTCCTCACCACCGAACTAGCCTACTTCCTGGTCCATCGGAAGGTTGCAAAGAGAATACAGGCTGTGCAGTAAAAGAAGGCGTAAATGCGATGGGTTTTGTCGGTAATCTCATGAATCCTCCATCTACTTCGAATTCCCGTATGGATCAACCCCAACAAGATTACTTTGAACTTCAATCCTCTCTGCCTTTGAATCCCAGCCCTATGCAAGATATTAATTCTAACACTTTATTTTATTCCCCACATAGCCTTCATAACCGCAGAGATTTCGACCACGTCTATAATAATGACGGAGAAGTGGTCGTTTTCAAGCCCGAACCTCTATCTTTATCTCTTTCCTCTCATCCTAGTTACCAGAACAGTCACCAGCTGGAGCTCAATCTACAAAGATATGAGTGTGGGCTTTATCCTTCTCCCGTTGTAGGGTCCATCTCAAATGACATCTCGAGGAGCTCAGTCCCTCTCAGTCCCTTCGCTGGCTACGCTTCGATTCTGAAAGGGTCCAGGTTTTTGAGGCCTGCGCAGCAATTGCTTGAGGAGTTCTGTGGTATTTGGTGTCAAGGGAATTTTAACGAGAAGTTAGAGGTTGATTCTGGTTTAATGGACTCCCCATCGGAGGCTTTAAGCGGCATCGTTGACGACCCTCTTGGTAGTTGCGGCGACGGAGGTGAAAGCCGACGAAAAAAGTCGAAACTTATTTCCATGATCGACGAGGTTTACAGAAGATACAAGCAATACTACCAGCAAATGCAGGAAGTTGTGGCATCCTTCGAGTGTGTATCCGGCCTTGGCAATGTTGCTCCATATGCAAATTTGGCTGTAAAAGCAATGTCTAAGCATTTCAGATGCCTGAAAAATGCAATTTTCGATCAACTTCAGTCCACCAACAAAGCTCAGAGTAACTTTTCTCAAAAATATATTCAGAATTCAGGATTTCTCAATCAGCAACCTGCTTGGCGACCTCATCGGGGACTTCCTGAGCGGGCAGTGACTGTTCTTCGAGCCTGGCTGTTTGAGCATTTCCTTCACCCTTACCCGACGGACACTGACAAGCTCATGTTGGCGAAACAGACAGGTCTATCACGGAGCCAGGTTTCTAACTGGTTTATCAATGCAAGAGTGAGGCTGTGGAAGCCAATGGTAGAAGATATACACATGCTAGAAACAAGACAAGGTCAAAAAACTGTGCAGACGGAAGAACTGAATGTCAATTGGTCAAATGATCATTTGCCTTCTACAAACTCCCTCTCGGACAAATCGACCCTACTCGTCCAAGACATTAGCTCCACACGTACGAGAAACGATCTTCACGGAGAGGGACTGTTGAATATATCATATAATAACCTGTCCAGTCGTGGCCCTCAAATGGACGTCAGTGCGACCATTGCAGGGGGCAGTGGCGGTTTTGGGGGTGGTGTTTCACTCACTCTTGGCCTGCACCAGAATAATGTAGTTGATCTATCAGAGCCCTTTCAAATTACTGCAGTTCAACGTTATGGCTTAGGACTCGACGATAGTGCTAATGGCGACGGATCTGTCATTGGCGGTTTCGAAGCTCAAAGTCGACATTTTGTGAGAGACATGATTGGAGGGCGACTATTACATGATTTTGTTGGCTAA 1821 46.57 MAEGFDGCHIPQQSRREKLRILTAQNHPPCLEPSLNRHLCVGLHPLYDPPSLTSSDLLTCASANIQDFPHHRTSLLPGPSEGCKENTGCAVKEGVNAMGFVGNLMNPPSTSNSRMDQPQQDYFELQSSLPLNPSPMQDINSNTLFYSPHSLHNRRDFDHVYNNDGEVVVFKPEPLSLSLSSHPSYQNSHQLELNLQRYECGLYPSPVVGSISNDISRSSVPLSPFAGYASILKGSRFLRPAQQLLEEFCGIWCQGNFNEKLEVDSGLMDSPSEALSGIVDDPLGSCGDGGESRRKKSKLISMIDEVYRRYKQYYQQMQEVVASFECVSGLGNVAPYANLAVKAMSKHFRCLKNAIFDQLQSTNKAQSNFSQKYIQNSGFLNQQPAWRPHRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEDIHMLETRQGQKTVQTEELNVNWSNDHLPSTNSLSDKSTLLVQDISSTRTRNDLHGEGLLNISYNNLSSRGPQMDVSATIAGGSGGFGGGVSLTLGLHQNNVVDLSEPFQITAVQRYGLGLDDSANGDGSVIGGFEAQSRHFVRDMIGGRLLHDFVG 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2842352 2845108 - Bma003944.1 Bma10g00308 89371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00308 606 SUPERFAMILY Homeodomain-like 387 451 IPR009057 -
Bma10g00308 606 Pfam Homeobox KN domain 403 442 IPR008422 GO:0003677|GO:0006355
Bma10g00308 606 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 576 - -
Bma10g00308 606 SMART prehox3 226 357 IPR006563 -
Bma10g00308 606 Pfam Associated with HOX 231 355 IPR006563 -
Bma10g00308 606 Gene3D - 389 450 - -
Bma10g00308 606 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 42 576 - -
Bma10g00308 606 ProSiteProfiles 'Homeobox' domain profile. 383 446 IPR001356 GO:0003677
Bma10g00308 606 CDD homeodomain 386 447 IPR001356 GO:0003677
Bma10g00308 606 SMART HOX_1 386 450 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01264 Bma10g00308 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00308 Bma-Chr10:2842352 Bma04g00527 Bma-Chr4:4641565 1.16E-67 dispersed
Bma10g00308 Bma-Chr10:2842352 Bma04g01264 Bma-Chr4:38296452 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57916 PF07526 POX 3.80E-38 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00308 - - vvi:100266680 696.427