Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00329 ATGGCTTCCACTACTGCTGCCGCTGCTACCTCCTCCTTCATCGGAACTCGCCTCCCCGACGTCCGACCCAACGCGGGCAGGGTCCAAGCTCGATTCGGGTTCGGACGCAAAAAGAGCGCGCCTAAGAAAGTTAAGAAGCGCGTTTCGGACCGCCCGCTTTGGTACCCGGGAGCAGTAGCACCCGAATGGCTCGACGGCAGCTTGGTTGGTGATTGTGGGTTCGACCCGTTTAACTTGGGAAAGCCAGCCGAGTACTTGCAGTTCGATCTGGATTCATTGGACCAGAATCTGTCGAAGAATGTGGCCGGGGACATTATCGGAACCCGGTTCGAGAGCGGGGATGTGAAGTCGACTCCATTCCAGCCGTACTCGGAGGTTTTTGGGTTGCAGAGGTTCCGTGAATGCGAGCTGATCCACGGAAGGTGGGCGATGTTGGCTACTGTCGGCGCCCTCTCCGTCGAGTGGCTCACCGGAGTTACCTGGCAAGATGCCGGAAAGGTAGAGCTGGTGGAAGGTTCATCTTACCTTGGGCTACCACTTCCATTTTCGATTTCAACATTGATATGGATCGAAGTGCTCCTAATTGGATACATAGAGTTTCAGAGAAATGCAGAGCTTGACCCAGAGAAAAGGCTATATCCAGGAGGGAAATATTTCGACCCGCTCGGCTTGGCGTCGGACCCGGAGAAGAAGGCCACTCTGCAACTGGCCGAAATCAAGCACGCTCGGCTCGCCATGGTGGGTTTCCTTGGTTTTGCAGTCCAAGCTGCTGCGACGGGTAAAGGTCCTCTCAACAACTGGGCTACTCACTTGAGCGACCCCCTTCACACAACCATTATCGACACTTTTACCTCCTCTTGA 861 55.05 MASTTAAAATSSFIGTRLPDVRPNAGRVQARFGFGRKKSAPKKVKKRVSDRPLWYPGAVAPEWLDGSLVGDCGFDPFNLGKPAEYLQFDLDSLDQNLSKNVAGDIIGTRFESGDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATVGALSVEWLTGVTWQDAGKVELVEGSSYLGLPLPFSISTLIWIEVLLIGYIEFQRNAELDPEKRLYPGGKYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFTSS 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3027897 3028842 + Bma003970.1 Bma10g00329 89392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00329 286 SUPERFAMILY Chlorophyll a-b binding protein 47 285 - -
Bma10g00329 286 Pfam Chlorophyll A-B binding protein 60 256 IPR022796 -
Bma10g00329 286 Gene3D Chlorophyll a/b binding protein domain 54 286 - -
Bma10g00329 286 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 1 285 - -
Bma10g00329 286 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 285 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00329 Bma-Chr10:3027897 Bma11g00895 Bma-Chr11:34032587 6.76E-179 dispersed
Bma10g00329 Bma-Chr10:3027897 Bma03g00334 Bma-Chr3:2489126 3.45E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00329 K08915 - egr:104426378 514.612