Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00340 ATATCACCTGCAACTCCAGCTTGGCTCAACAGTGGCGACAACGCGTGGCAATTGACGTCCGCTACGCTTGTCGGTCTGCAAAGTATGCCGGGTCTGGTGATTCTCTACGGCAGCATCGTGAAGAAGAAATGGGCGGTGAACTCGGCTTTCATGGCCCTCTACGCCTTCGCCGCCACCCTCATATGCTGGGTTCTGGTCAGCTACCGTATGGCCTTTGGGGACGAATTGCTTCCACTCTGGGGCAAAGGGGCGCCTTCTCTCGGCCAATACTACCTGAGGAACCGAGCCCAAATCCCGGAGAGCACGCACTATCGAGAAGATGGGTTGATTGAGTCTCAGAAGATCGAGCCCTTTTATCCAATGGCGACGCTAGTTTACTTCCAGTTTACATTTGCCGCAATTACGCTTATTTTACTGGCGGGGTCTGTTCTTGGGCGGATGAACATCAAAGCTTGGATGGCTTTTGTCCCTCTTTGGCTAATTTTCTCCTACACGGTCGGAGCCTACAGTTTATGGGGCGGAGGGTTTCTCTTTCACTGGGGCGTCATCGATTATTCCGGCGGCTATGTCATCCACCTCTCCTCCGGGATCGCCGGCTTCACCGCTGCTTATTGGGTTGGTCCGAGAATAAGGAGCGATAGGGAGAGATTTCCACCCAATAACGTCTTGCTCACGCTCGCCGGGGCTGGGCTGCTTTGGATGGGCTGGTCGGGGTTCAACGGCGGTGCTCCGCGGGCAGCGAATGTTGTGGCCTCAATTGCTGTGTTGAACACAAACATAAGTGCAGCGACGAGCCTTCTTGTGTGGACCAGTTTGGACGTGATTGTTTTCGGAAAACCATCGGTGATCGGAGCGGTTCAGGGCATGATCACCGGCCTCGCTTGCGTCACCCCGGGAGCAGGAGTCGTTCAACCATGGGCCGCCATAGTAATGGGAGTCCTCGCTGGCAGCATTCCATGGGTGTCTATGATGATTCTTCACAAAAAGTCCACTCTTCTACAAAAGGTGGACGACACTCTAGGAGTATTTTACACACATGGAGTTGCAGGAATTTTAGGCGGTCTTCTAACAGGGCTCCTGGCAGAGCCATCGCTGTGCAGTCTCAGCCTCCCAGTGACCAACACAAGAGGCGCATTTTATGGAGATGGTGGGGGCATGCTGTTTTTCAAACAATTGGTTGCGGCAATGTTTATTATAGGGTGGAACATAGTCTCCACCACAATCATACTCTTGTTTATAAGAGTTTTCATTCCGTTGAGAATGTCCGACGAGGAGCTGCTGGTCGGAGACGATGCGGCTCACGGGGAGGAGGCTTATGCTCTTTGGGGAGACGGAGAGAAATTCGACCCGAATAAACACGGGTGGAATATGGGTGCTCATGCAGAGGAATTGGCTCCCTCTCCCTATGTCCATGGTGCTAGAGGGGTAACCATTGTTTTG 1440 53.06 ISPATPAWLNSGDNAWQLTSATLVGLQSMPGLVILYGSIVKKKWAVNSAFMALYAFAATLICWVLVSYRMAFGDELLPLWGKGAPSLGQYYLRNRAQIPESTHYREDGLIESQKIEPFYPMATLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSLWGGGFLFHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIRSDRERFPPNNVLLTLAGAGLLWMGWSGFNGGAPRAANVVASIAVLNTNISAATSLLVWTSLDVIVFGKPSVIGAVQGMITGLACVTPGAGVVQPWAAIVMGVLAGSIPWVSMMILHKKSTLLQKVDDTLGVFYTHGVAGILGGLLTGLLAEPSLCSLSLPVTNTRGAFYGDGGGMLFFKQLVAAMFIIGWNIVSTTIILLFIRVFIPLRMSDEELLVGDDAAHGEEAYALWGDGEKFDPNKHGWNMGAHAEELAPSPYVHGARGVTIVL 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3212655 3214481 - Bma030338 Bma10g00340 89403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00340 480 TIGRFAM amt: ammonium transporter 13 439 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bma10g00340 480 Gene3D Ammonium transporter AmtB like domains 1 442 IPR029020 -
Bma10g00340 480 PRINTS Rhesus blood group protein signature 128 144 IPR002229 GO:0005887
Bma10g00340 480 PRINTS Rhesus blood group protein signature 254 276 IPR002229 GO:0005887
Bma10g00340 480 PRINTS Rhesus blood group protein signature 347 363 IPR002229 GO:0005887
Bma10g00340 480 PRINTS Rhesus blood group protein signature 223 241 IPR002229 GO:0005887
Bma10g00340 480 PRINTS Rhesus blood group protein signature 309 327 IPR002229 GO:0005887
Bma10g00340 480 PANTHER AMMONIUM TRANSPORTER 2 2 477 - -
Bma10g00340 480 ProSitePatterns Ammonium transporters signature. 184 209 IPR018047 GO:0008519|GO:0016020|GO:0072488
Bma10g00340 480 PANTHER AMMONIUM TRANSPORTER MEP2 2 477 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bma10g00340 480 SUPERFAMILY Ammonium transporter 8 421 - -
Bma10g00340 480 Pfam Ammonium Transporter Family 15 439 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00281 Bma-Chr10:2530463 Bma10g00340 Bma-Chr10:3212655 0 dispersed
Bma10g00340 Bma-Chr10:3212655 Bma15g00927 Bma-Chr15:33383012 6.91E-180 dispersed
Bma10g00340 Bma-Chr10:3212655 Bma02g00930 Bma-Chr2:49092498 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00340 K03320 - zju:107430906 842.417