Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00360 ATGGTTTCCTCTCAGTTTACTGGCTTCATGGATTCCTGCCAGTCCAAGCTCATTAAGCGTCCTTTTCTTTTTCCTCTGAAACCTATCGATGCCGTGGATGCCGATCATGTTGAGCTAGATTTCTCTGATGTTTTTGGTCCTGTACCACTTGATGAAGCTGATTCAGCTAATCTCTGCATAGAAGGTGAAAGAAAGCTTGTCTTTGATGATCCAGAAGTCATTTGCCATCGGTCACATTCTTTGGTTGGTCCTTCTTCATATGTAAGAGAGTCATTTGGGCTCAGCAAGCTTACTATACATGAAAGTGAGGATTCAGCGGAAAAAATTGAATTTATCAGTGAGGATGCGGTTGGAAAAATTTTTGAACCTTCAAGTGATGATACTTTAGTTGAAAGAAATCTTGAAGCTTTGAGTTTAAATCCCATAAAGGTGCAGGGTGTTGGAATTGATGACTTTGAGATTCTGAAGGTTGTGGGTGCTGGTGCTTTTGCAAAGGTTTATCAGGTAAGAAAAAAGGGTACATCAGAGATATTTGCAATGAAAGTTATGCGGAAAGACAAGATTATGGAGAAAAATCATGCTGAATACATGATAGCTGAGAGGGAGATTTTGACAAAAGTTGAACATCCTTACATTGTCCAGCTTAGATACTCCTTTCAAACAAAGTATAGGCTATATCTTGTTCTGGACTTTGTAAATGGGGGACACCTTTTCTTTCAGCTCTACCACCATGGCCTTTTTAGGGAAGAGCTTGCTCGTATCTATGCTGCTGAGATTGTTTCTGCCGTTTCTCACCTCCATGACAATGGCATAATGCACAGAGATCTTAAACCTGAAAATATTTTATTAGACGTCGATGGCCATGTGATGCTGACTGATTTTGGGCTGGCCAAGCAATTTGATGCAAATACGAGGGCAAATTCTATGTGTGGAACAGTAGAATATATGGCCCCAGAAATAGTTCTTGGAAAGGGCCACGACAAGGCTGCAGATTGGTGGAGTGTGGGAATACTTGCGTTTGAGATGCTCACTGGGAAGCCTCCATTTACTGGGAGTAGGCACAAAGTCCAGCAAAAGATAGTAAAGGATAAGATAAAGCTGCCGGCTTTTTTGTCAAGTGAAGCACATTCTCTTTTGAAAGGGCTGCTGCAAAAGGATGCAAGCAAGCGCCTGGGAAATGGGCCTATGGGTGGGGAGGACATCAAGCGCCATAAGTGGTTCAAGGCGATCAATTGGAAGAAACTGGAGTCAAGAGGTATCGAACCAAGTTTCCGCCCTCAAGTTGCTGGAAAGCATTGTGTTGCCAACTTTGAGAAACACTGGACCGACATGCCGATTGCAGATTCTCCTGTTGCCAGTCCTAAAGCTGGTGGAAATGCCTTCACAGGCTTTAGCTACGTAAGGCCACCTGCTTCATCCCTTAGTAGAGAGAGCCCGGTCTGCTAG 1446 43.36 MVSSQFTGFMDSCQSKLIKRPFLFPLKPIDAVDADHVELDFSDVFGPVPLDEADSANLCIEGERKLVFDDPEVICHRSHSLVGPSSYVRESFGLSKLTIHESEDSAEKIEFISEDAVGKIFEPSSDDTLVERNLEALSLNPIKVQGVGIDDFEILKVVGAGAFAKVYQVRKKGTSEIFAMKVMRKDKIMEKNHAEYMIAEREILTKVEHPYIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREELARIYAAEIVSAVSHLHDNGIMHRDLKPENILLDVDGHVMLTDFGLAKQFDANTRANSMCGTVEYMAPEIVLGKGHDKAADWWSVGILAFEMLTGKPPFTGSRHKVQQKIVKDKIKLPAFLSSEAHSLLKGLLQKDASKRLGNGPMGGEDIKRHKWFKAINWKKLESRGIEPSFRPQVAGKHCVANFEKHWTDMPIADSPVASPKAGGNAFTGFSYVRPPASSLSRESPVC 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3382980 3385462 + Bma004002.1 Bma10g00360 89423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00360 481 ProSitePatterns Protein kinases ATP-binding region signature. 158 181 IPR017441 GO:0005524
Bma10g00360 481 ProSiteProfiles AGC-kinase C-terminal domain profile. 408 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Bma10g00360 481 CDD STKc_AGC 158 407 IPR045270 GO:0004674|GO:0005524
Bma10g00360 481 SMART pkinase_C_6 408 468 IPR000961 GO:0004674|GO:0005524|GO:0006468
Bma10g00360 481 Pfam Protein kinase domain 152 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00360 481 Gene3D Phosphorylase Kinase; domain 1 149 448 - -
Bma10g00360 481 SUPERFAMILY Protein kinase-like (PK-like) 149 472 IPR011009 -
Bma10g00360 481 SMART serkin_6 152 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00360 481 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 1 478 - -
Bma10g00360 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Bma10g00360 481 PANTHER RIBOSOMAL PROTEIN S6 KINASE 1 478 - -
Bma10g00360 481 ProSiteProfiles Protein kinase domain profile. 152 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00360 481 Gene3D Transferase(Phosphotransferase) domain 1 232 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00193 Bma-Chr8:2310372 Bma10g00360 Bma-Chr10:3382980 3.43E-170 dispersed
Bma08g01171 Bma-Chr8:50679270 Bma10g00360 Bma-Chr10:3382980 1.81E-59 dispersed
Bma10g00360 Bma-Chr10:3382980 Bma08g00108 Bma-Chr8:1284572 1.64E-59 dispersed
Bma14g01945 Bma-Chr14:41870622 Bma10g00360 Bma-Chr10:3382980 2.37E-42 dispersed
Bma15g00522 Bma-Chr15:6002312 Bma10g00360 Bma-Chr10:3382980 2.44E-56 dispersed
Bma10g00360 Bma-Chr10:3382980 Bma07g00121 Bma-Chr7:1949041 1.57E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66726 PF00069 Pkinase 1.10E-74 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00360 K04688 - zju:107431119 699.893