Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma10g00360 | ATGGTTTCCTCTCAGTTTACTGGCTTCATGGATTCCTGCCAGTCCAAGCTCATTAAGCGTCCTTTTCTTTTTCCTCTGAAACCTATCGATGCCGTGGATGCCGATCATGTTGAGCTAGATTTCTCTGATGTTTTTGGTCCTGTACCACTTGATGAAGCTGATTCAGCTAATCTCTGCATAGAAGGTGAAAGAAAGCTTGTCTTTGATGATCCAGAAGTCATTTGCCATCGGTCACATTCTTTGGTTGGTCCTTCTTCATATGTAAGAGAGTCATTTGGGCTCAGCAAGCTTACTATACATGAAAGTGAGGATTCAGCGGAAAAAATTGAATTTATCAGTGAGGATGCGGTTGGAAAAATTTTTGAACCTTCAAGTGATGATACTTTAGTTGAAAGAAATCTTGAAGCTTTGAGTTTAAATCCCATAAAGGTGCAGGGTGTTGGAATTGATGACTTTGAGATTCTGAAGGTTGTGGGTGCTGGTGCTTTTGCAAAGGTTTATCAGGTAAGAAAAAAGGGTACATCAGAGATATTTGCAATGAAAGTTATGCGGAAAGACAAGATTATGGAGAAAAATCATGCTGAATACATGATAGCTGAGAGGGAGATTTTGACAAAAGTTGAACATCCTTACATTGTCCAGCTTAGATACTCCTTTCAAACAAAGTATAGGCTATATCTTGTTCTGGACTTTGTAAATGGGGGACACCTTTTCTTTCAGCTCTACCACCATGGCCTTTTTAGGGAAGAGCTTGCTCGTATCTATGCTGCTGAGATTGTTTCTGCCGTTTCTCACCTCCATGACAATGGCATAATGCACAGAGATCTTAAACCTGAAAATATTTTATTAGACGTCGATGGCCATGTGATGCTGACTGATTTTGGGCTGGCCAAGCAATTTGATGCAAATACGAGGGCAAATTCTATGTGTGGAACAGTAGAATATATGGCCCCAGAAATAGTTCTTGGAAAGGGCCACGACAAGGCTGCAGATTGGTGGAGTGTGGGAATACTTGCGTTTGAGATGCTCACTGGGAAGCCTCCATTTACTGGGAGTAGGCACAAAGTCCAGCAAAAGATAGTAAAGGATAAGATAAAGCTGCCGGCTTTTTTGTCAAGTGAAGCACATTCTCTTTTGAAAGGGCTGCTGCAAAAGGATGCAAGCAAGCGCCTGGGAAATGGGCCTATGGGTGGGGAGGACATCAAGCGCCATAAGTGGTTCAAGGCGATCAATTGGAAGAAACTGGAGTCAAGAGGTATCGAACCAAGTTTCCGCCCTCAAGTTGCTGGAAAGCATTGTGTTGCCAACTTTGAGAAACACTGGACCGACATGCCGATTGCAGATTCTCCTGTTGCCAGTCCTAAAGCTGGTGGAAATGCCTTCACAGGCTTTAGCTACGTAAGGCCACCTGCTTCATCCCTTAGTAGAGAGAGCCCGGTCTGCTAG | 1446 | 43.36 | MVSSQFTGFMDSCQSKLIKRPFLFPLKPIDAVDADHVELDFSDVFGPVPLDEADSANLCIEGERKLVFDDPEVICHRSHSLVGPSSYVRESFGLSKLTIHESEDSAEKIEFISEDAVGKIFEPSSDDTLVERNLEALSLNPIKVQGVGIDDFEILKVVGAGAFAKVYQVRKKGTSEIFAMKVMRKDKIMEKNHAEYMIAEREILTKVEHPYIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREELARIYAAEIVSAVSHLHDNGIMHRDLKPENILLDVDGHVMLTDFGLAKQFDANTRANSMCGTVEYMAPEIVLGKGHDKAADWWSVGILAFEMLTGKPPFTGSRHKVQQKIVKDKIKLPAFLSSEAHSLLKGLLQKDASKRLGNGPMGGEDIKRHKWFKAINWKKLESRGIEPSFRPQVAGKHCVANFEKHWTDMPIADSPVASPKAGGNAFTGFSYVRPPASSLSRESPVC | 481 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3382980 | 3385462 | + | Bma004002.1 | Bma10g00360 | 89423 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma10g00360 | 481 | ProSitePatterns | Protein kinases ATP-binding region signature. | 158 | 181 | IPR017441 | GO:0005524 | |
Bma10g00360 | 481 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 408 | 476 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Bma10g00360 | 481 | CDD | STKc_AGC | 158 | 407 | IPR045270 | GO:0004674|GO:0005524 | |
Bma10g00360 | 481 | SMART | pkinase_C_6 | 408 | 468 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Bma10g00360 | 481 | Pfam | Protein kinase domain | 152 | 407 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma10g00360 | 481 | Gene3D | Phosphorylase Kinase; domain 1 | 149 | 448 | - | - | |
Bma10g00360 | 481 | SUPERFAMILY | Protein kinase-like (PK-like) | 149 | 472 | IPR011009 | - | |
Bma10g00360 | 481 | SMART | serkin_6 | 152 | 407 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma10g00360 | 481 | PANTHER | SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 | 1 | 478 | - | - | |
Bma10g00360 | 481 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 271 | 283 | IPR008271 | GO:0004672|GO:0006468 | |
Bma10g00360 | 481 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 1 | 478 | - | - | |
Bma10g00360 | 481 | ProSiteProfiles | Protein kinase domain profile. | 152 | 407 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma10g00360 | 481 | Gene3D | Transferase(Phosphotransferase) domain 1 | 232 | 426 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g00193 | Bma-Chr8:2310372 | Bma10g00360 | Bma-Chr10:3382980 | 3.43E-170 | dispersed | |
Bma08g01171 | Bma-Chr8:50679270 | Bma10g00360 | Bma-Chr10:3382980 | 1.81E-59 | dispersed | |
Bma10g00360 | Bma-Chr10:3382980 | Bma08g00108 | Bma-Chr8:1284572 | 1.64E-59 | dispersed | |
Bma14g01945 | Bma-Chr14:41870622 | Bma10g00360 | Bma-Chr10:3382980 | 2.37E-42 | dispersed | |
Bma15g00522 | Bma-Chr15:6002312 | Bma10g00360 | Bma-Chr10:3382980 | 2.44E-56 | dispersed | |
Bma10g00360 | Bma-Chr10:3382980 | Bma07g00121 | Bma-Chr7:1949041 | 1.57E-57 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66726 | PF00069 | Pkinase | 1.10E-74 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma10g00360 | K04688 | - | zju:107431119 | 699.893 |