Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00389 CCCACTATCATGGCTTGCAGTGCCGCCGACCTCCAATCCCTCTTGGGTGGCGCCGCCAACGCCACTGCCGCTGCCGACTACATTTGCGCGCAGTTTCAAGCAGTGTCCAACAAGTTTGTAGACACGAACTATGCTGTTGATAACACCTACCTCCTCTTCTCTGCTTACCTTGTTTTCGCCATGCAGCTCGGCTTTGCAATGCTGTGCGCAGGCTCCGTCAGAGCGAAGAACACCATGAACATTATGCTTACCAATGTACTCGACGCCGCAACTGGCGGTATTTTCTACTATCTGTTTGGATTTGCGTTGGCTTTCGGCACTCCATCGAATGGGTTCATTGGGCAGCACTTTTTTGGGCTAAGTCAGTTTCCTTCTCCGTCATATGACTATGGCTTCTTTCTATTCCAGTGGGCTTTCGCCATTGCAGCTGCTGGGATCACCAGCGGTTCGATCGCAGAAAGAACACAGTTTGTTTCTTATTTGATCTATTCGTCTTTCTTGACCGGTCTGGTTTACCCAATTGTTGCTCACTGGTTCTGGTCTGCCGATGGGTGGGGAAGCGCTGCTAGAGCTGATAACCTCTTGTTTGGTTCTGGGGTTATTGATTTTGCTGGCTCAGGTGTTGTTCACTTGGTCGGTGGCATTGCCGGCTTGTGGGGAGCCTTCATTGAGGGCCCACGTATTGGTCGGTTTGACCACGGCGGAAAACCCGTGGCTCTACGTGGTCACAGTGGCACGCTCGTCGTCCTCGGAACATTCCTTCTCTGGTTCGGTTGGTACGGTTTCAATCCAGGCTCATTCCTTAACATCTTGAAGGCTTATGGAGAAAGTGGTTCATATTATGGGCAGTGGAGCGCAGTTGGGAGAACCGCAGTGACGACTACCCTAGCCGGCTCCTCCGCCGCCCTCACCACTCTCTTCGGGAAACGGTTGATCTCAGGCCACTGGAACGTAACCGACGTTTGCAATGGCTTGCTCGGCGGATTTGCAGCCGTGACCGGTGGGTGCGCAGTGGTCGACCCGTGGGCTGCAGTCCTATGCGGTTTTGTGGCAGCTTGGGTGCTGATTGCATTCAACAAGCTGGCCGAGAAGCTCCAGTACGACGACCCGCTCGAAGCAGCTCAGCTTCACGGAGGGTGTGGAGTGTGGGGAATCATCTTCACTGGATTGTTTGCCAAAAAAGAGTACGTAAATGAGATCTATCCAGGTAACCCAAACAGACCGTATGGGCTGTTCATGGGCGGCGGAGGCAGCCTACTGGCGGCGCATATCGTCCAGGTACTGGCGATCACCGGCTGGGTGAGCCTGACAATGGGGACGTTGTTCTGGGTCCTGCACAAACTGAAGCTTTTGAGAATTACAGCTGAGGAAGAATTGGCAGGAATGGATCTGACCAGCCATGGAGGTTTTGCGTATGAATATTACGACGAGAGTAAAACC 1440 53.19 PTIMACSAADLQSLLGGAANATAAADYICAQFQAVSNKFVDTNYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYLFGFALAFGTPSNGFIGQHFFGLSQFPSPSYDYGFFLFQWAFAIAAAGITSGSIAERTQFVSYLIYSSFLTGLVYPIVAHWFWSADGWGSAARADNLLFGSGVIDFAGSGVVHLVGGIAGLWGAFIEGPRIGRFDHGGKPVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGESGSYYGQWSAVGRTAVTTTLAGSSAALTTLFGKRLISGHWNVTDVCNGLLGGFAAVTGGCAVVDPWAAVLCGFVAAWVLIAFNKLAEKLQYDDPLEAAQLHGGCGVWGIIFTGLFAKKEYVNEIYPGNPNRPYGLFMGGGGSLLAAHIVQVLAITGWVSLTMGTLFWVLHKLKLLRITAEEELAGMDLTSHGGFAYEYYDESKT 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3828980 3830419 - Bma030345 Bma10g00389 89452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00389 480 PANTHER AMMONIUM TRANSPORTER 4 479 - -
Bma10g00389 480 SUPERFAMILY Ammonium transporter 44 453 - -
Bma10g00389 480 PANTHER AMMONIUM TRANSPORTER 4 479 - -
Bma10g00389 480 Gene3D Ammonium transporter AmtB like domains 23 480 IPR029020 -
Bma10g00389 480 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bma10g00389 480 TIGRFAM amt: ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bma10g00389 480 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00389 Bma-Chr10:3828980 Bma15g00616 Bma-Chr15:7829645 3.85E-19 dispersed
Bma02g00744 Bma-Chr2:38467196 Bma10g00389 Bma-Chr10:3828980 0 transposed
Bma14g01220 Bma-Chr14:18758158 Bma10g00389 Bma-Chr10:3828980 0 transposed
Bma10g00389 Bma-Chr10:3828980 Bma13g00745 Bma-Chr13:23403753 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00389 K03320 - jre:109020544 819.305