Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00396 ATGAGCAGCTGTTTACATTACTATCAATCGAGATCGTTTCTAGCAAGATTAGCCGGGCTTCAGACCGTAGTGTATGTACCTTTGAAATGTGGTGTTGTAGAACTTGGCTGGGTTAAATCAACTCCGGAGGAACAGAAGGTTTTGGATATGGTCAAATCTCTGTTTGGGCAGTCTGATTATCCGCAGTCAAAGGCATTTCCAAAACTTTTTGAACATGAACTGAGTCTAGGTAGCTTAAAATCTCCGACACTAGGCATTAATTTTTGGCCAAAGATAGAAGACGATGCAGATATGACTACGGATGCTTATGACGTACAACCACTCGGTAATCATGCAAGGCAAGACATTGTCGGGGGTTTTAATGCTCAGCCGAGGGTCTCTTGTTTGGAGTTTCCCCTCGATGAGTCGGCTCAAGCCGATGAGAGAAAACCGAGAAAAAGAGGGAGAAAGCCCGCAAACGGGAGGGAAGAACCATTGAATCACGTGGAAGCAGAGAGACAGAGGCGTGAGGAGCTCAACCAACGATTCTACGCGTTAAGAGCTGTCGTCCCTAACATATCGAAAATGGACAAGGCTTCGCTTCGTGGCGACGCCATTGCTTACATCGCTGATCTCCAGATGAAAATTCAGCTGTTAGAAACCGAGAAACATATGGGAAGCAACAAACAAAAGACACTTCCCGCTCCGGAAATTGATTTTCAGACAAGAGAAAAGGATGCTGTCGTGCAATTGAGTTGCCCCCTGGACACTCACCCTGTTTCCAAAGTCATTCAAACCTTCGAAGAACATCAGATTGTCCCAAAAGAATGTAATGTTTTCACTACAGAATCAGGCATGGTTGTTCATACGTTTTCCATTCAAACCGAACCCGGCACTGCTGAGCAGTTGAAGGAAAAGCTGGCTGCTTCCCTCTCGAAATGA 921 45.49 MSSCLHYYQSRSFLARLAGLQTVVYVPLKCGVVELGWVKSTPEEQKVLDMVKSLFGQSDYPQSKAFPKLFEHELSLGSLKSPTLGINFWPKIEDDADMTTDAYDVQPLGNHARQDIVGGFNAQPRVSCLEFPLDESAQADERKPRKRGRKPANGREEPLNHVEAERQRREELNQRFYALRAVVPNISKMDKASLRGDAIAYIADLQMKIQLLETEKHMGSNKQKTLPAPEIDFQTREKDAVVQLSCPLDTHPVSKVIQTFEEHQIVPKECNVFTTESGMVVHTFSIQTEPGTAEQLKEKLAASLSK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4119321 4120289 - Bma004037.1 Bma10g00396 89459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00396 306 PANTHER TRANSCRIPTION FACTOR BHLH3 2 306 - -
Bma10g00396 306 SMART finulus 162 211 IPR011598 GO:0046983
Bma10g00396 306 MobiDBLite consensus disorder prediction 133 167 - -
Bma10g00396 306 Gene3D - 148 221 IPR036638 GO:0046983
Bma10g00396 306 Pfam Helix-loop-helix DNA-binding domain 160 206 IPR011598 GO:0046983
Bma10g00396 306 PANTHER MYC 2 306 IPR045084 GO:0003700|GO:0006355
Bma10g00396 306 CDD bHLH_AtAIB_like 153 217 - -
Bma10g00396 306 MobiDBLite consensus disorder prediction 135 167 - -
Bma10g00396 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Bma10g00396 306 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 55 IPR025610 -
Bma10g00396 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 226 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01154 Bma-Chr6:48458751 Bma10g00396 Bma-Chr10:4119321 3.12E-07 dispersed
Bma10g00396 Bma-Chr10:4119321 Bma10g00424 Bma-Chr10:4463780 0 dispersed
Bma10g00396 Bma-Chr10:4119321 Bma10g00397 Bma-Chr10:4190458 1.76E-150 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57921 PF14215 bHLH-MYC_N 1.50E-10 CL0161 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00396 - - qsu:111999675 400.208