Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00422 ATGGCGTCCGGCGCTAGCTCTCCTTGCGGGGCCTGCAAGTTTCTGAGGCGAAAGTGCGCGGCTGATTGTATATTTGCGCCGTACTTTTGCTCGGAACAAGGGCCTGCTCGATTCGCTGCGATCCATAAAGTGTTTGGAGCGAGCAATGTTGCGAAGCTTTTGTTGCATGTTCCTGTTCCTGATCGGTCTGAGGCTGTTGTTACTATTTCTTATGAAGCTCAAGCTAGAATTAGAGATCCTGTTTATGGATGTGTTTCTCATATCTTTGCCTTGCAACAGCAGGTTGCATGCTTGCAAGCTCAACTAGCCCAAGCTAGGGCTCAACTGGCTCAGAAACTGAATGATCCTCACAAAGTAAAGAATCAATGGACCCAGAATGATTATCATAATGGAGTTTCAAATTTTCCAACTTATCCTTCTTGCCTAGCAAACCCTATTTCCCCCCAGAGTTCAGTCGAATCCATGAATCACTGCAGTGAAGCAATGAATCTGCAGGAAATACAAAGCAGATCAGCAGACGAGTTTCAGTACCAGACCTTCTGTAAGGAAAGGCTTTGTAATAGTGATGAACTTCAAACATTGGCTTTTAGAATGATGAGGGGTTAA 606 45.05 MASGASSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVAKLLLHVPVPDRSEAVVTISYEAQARIRDPVYGCVSHIFALQQQVACLQAQLAQARAQLAQKLNDPHKVKNQWTQNDYHNGVSNFPTYPSCLANPISPQSSVESMNHCSEAMNLQEIQSRSADEFQYQTFCKERLCNSDELQTLAFRMMRG 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4424258 4425377 - Bma004069.1 Bma10g00422 89485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00422 201 Coils Coil 88 115 - -
Bma10g00422 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 2 200 - -
Bma10g00422 201 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 200 - -
Bma10g00422 201 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
Bma10g00422 201 Pfam Lateral organ boundaries (LOB) domain 8 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00604 Bma-Chr9:43218142 Bma10g00422 Bma-Chr10:4424258 5.77E-50 dispersed
Bma10g00422 Bma-Chr10:4424258 Bma14g00879 Bma-Chr14:9901680 3.79E-39 dispersed
Bma10g00422 Bma-Chr10:4424258 Bma13g00845 Bma-Chr13:36303614 2.58E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57925 PF03195 LOB 2.80E-37 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00422 K13944 - tcc:18613181 248.054