Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00457 ATGACTTCAGGAACGAGGCTACCAACATGGAGGGAAAGGGAAAACAACAAGAGAAGGGAGAGAAGGAGGAGAGCTATAGCGGCGAAGATCTTCACTGGTCTCAGAATGTACGGAAACTATAAGCTCCCGAAGCACTGCGATAACAATGAGGTCCTTAAAGCTCTCTGCGACGAGGCCGGTTGGACCGTTGAATCCGACGGCACCACCTACCGTAAGGGATTTAAACCTGTTGAAAGAATAGATCTTGTTGGTGGGTTGCCAGCGGCTGCCTCCTCATCTCAGCATCACAGTCCATATGCTTCCTTCATTCCGAGCCCCAGTTCTTCCTCTTTTCCTAGTCCAGTCTCATCTTCGTATACTGCTGCTAATCCTACAACGGATGGAAATTCCCTCATCCCTTGGCTCAAAAATCTTTCATCTGCCTCATCATCAGCCTCCTCTTCCAAGCGCCCCCACCTCTATATCCATGGAGGCTCTGTCAGTGCTCCAGTTACCCCACCTTTGAGCTCACCAAGTGCCAAAACACCCCGAATTAGAGCCAATTGGGAAGAACAAACAGCATCCCCTGGTTGGACTGCTCAACAATACTCGATCCTACCATCTTCTACTCTACCAAGCCCTCCGTCTTCTACTCCACCAAGCCCTGGCCGCCAGATTTTTCCGGATCCAGAATGGTTTTCTGGAATTAGAATTCCTTACAGTGGACCAACTTCTCCAACGTTCAGCCTTGTCTCTTCTAACCCATTTGGCTTTAAGGAAGAGGCGTTAACTGGTGGTGGATCGCGTATGTGGACTCCCGGGCAAAGTGGGACATGCTCTCCGGCCATTGCAGCAGGCTCTGATCACACTGCAGACATTCCGATGTCTGAACTTATTTCAGATGAGTTTGCATTTGGAAGCAATGCAGCTGGAATCGTTAAGCCTTGGGAAGGAGAGAGGATCCATGAAGATTCTGGATCAGATGATCTCGAGCTGACCCTTGGGAGTTCAAGGACAAGGTGA 1002 49.8 MTSGTRLPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVESDGTTYRKGFKPVERIDLVGGLPAAASSSQHHSPYASFIPSPSSSSFPSPVSSSYTAANPTTDGNSLIPWLKNLSSASSSASSSKRPHLYIHGGSVSAPVTPPLSSPSAKTPRIRANWEEQTASPGWTAQQYSILPSSTLPSPPSSTPPSPGRQIFPDPEWFSGIRIPYSGPTSPTFSLVSSNPFGFKEEALTGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSELISDEFAFGSNAAGIVKPWEGERIHEDSGSDDLELTLGSSRTR 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5150979 5154187 + Bma004128.1 Bma10g00457 89520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00457 333 MobiDBLite consensus disorder prediction 157 177 - -
Bma10g00457 333 MobiDBLite consensus disorder prediction 163 177 - -
Bma10g00457 333 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 207 IPR033264 GO:0003700|GO:0006351|GO:0009742
Bma10g00457 333 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 207 - -
Bma10g00457 333 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 208 333 - -
Bma10g00457 333 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Bma10g00457 333 MobiDBLite consensus disorder prediction 1 21 - -
Bma10g00457 333 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 208 333 IPR033264 GO:0003700|GO:0006351|GO:0009742
Bma10g00457 333 MobiDBLite consensus disorder prediction 198 219 - -
Bma10g00457 333 MobiDBLite consensus disorder prediction 313 333 - -
Bma10g00457 333 MobiDBLite consensus disorder prediction 205 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00457 - - - tcc:18594295 512.686
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00457 Bma-Chr10:5150979 Bma14g00977 Bma-Chr14:11391587 3.35E-133 dispersed
Bma10g01198 Bma-Chr10:42537550 Bma10g00457 Bma-Chr10:5150979 0 transposed
Bma10g00457 Bma-Chr10:5150979 Bma13g00924 Bma-Chr13:39682631 7.22E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g82 . . . . . . Bma10g00457 . Cmo16g00463 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0204 . . . . . . . . . . Bda12g00814 . . . . . . . . Cma16g00431 . . Cpe14g00363 . . . . . . . . . . . . . . . . Csa04g00815 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g02306 BCT 33 318 BZR Transcription Factor Family AT1G75080 64.9 5.2e-89 324.7
Bma04g00201 BCT 32 316 BZR Transcription Factor Family AT1G75080 66.0 1.7e-87 319.7
Bma09g00060 . 28 307 BZR Transcription Factor Family AT1G75080 57.1 4.6e-77 285.0
Bma01g02306 BCT 33 316 BZR Transcription Factor Family AT1G19350 64.0 1.8e-89 326.2
Bma04g00201 BCT 32 313 BZR Transcription Factor Family AT1G19350 63.2 1.5e-83 306.6
Bma09g00060 . 28 306 BZR Transcription Factor Family AT1G19350 58.6 7.0e-78 287.7
Bma09g00060 . 2 308 BZR Transcription Factor Family AT3G50750 57.2 2.9e-77 285.4
Bma01g02306 BCT 1 313 BZR Transcription Factor Family AT3G50750 51.1 6.4e-61 231.1
Bma04g00201 BCT 3 310 BZR Transcription Factor Family AT3G50750 50.3 1.8e-55 213.0
Bma14g00977 . 77 328 BZR Transcription Factor Family AT4G18890 55.3 1.2e-54 209.9
Bma10g00457 . 123 333 BZR Transcription Factor Family AT4G18890 50.9 4.1e-44 174.9
Bma14g00977 . 1 328 BZR Transcription Factor Family AT1G78700 70.3 6.5e-113 404.1
Bma10g00457 . 1 333 BZR Transcription Factor Family AT1G78700 66.8 1.2e-106 383.3
Bma13g00924 . 1 326 BZR Transcription Factor Family AT1G78700 67.1 4.5e-98 354.8
Bma10g01198 . 25 283 BZR Transcription Factor Family AT1G78700 60.1 7.8e-66 247.7
Bma09g00060 . 28 207 BZR Transcription Factor Family AT4G36780 72.2 1.4e-60 229.9
Bma01g02306 BCT 33 212 BZR Transcription Factor Family AT4G36780 57.3 6.6e-39 157.9
Bma04g00201 BCT 32 210 BZR Transcription Factor Family AT4G36780 56.5 5.6e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57928 PF05687 BES1_N 1.60E-59 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00457 Bma_Chr10 FPKM 16.993795 18.555948 16.930765 15.941805 8.115936 7.76867 7.639737 1.050672 1.079531 1.110193