Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00458 ATGTTACTGAATGGTTTTACGTTTCCAACTACCAGAGTATCTTGGTGCTTACAGAAAGATCTTCCATGCTCTGGAAACGCTGAATATCATTCGTTGTTTATCAATTGTGGAGGAAGAAGAGTAGAAATTGATGGCAATCAATATGAAGAGGACTTGTTTAGTGAAGGCAGATCAAACTTTTATTCAGTTGGAGAAAGGTGGGGTTACAGCAGTACAGGGATGTTCATGGGTAACGAGCATGTTCCTAACTTAGCAGAGAATACCTTTGGTCTGAACTTGAGTGGGGCGAGCTTCTATGAGACAGCTCGACTGTCCCCACTTTCACTTAAGTACTATGGCCTTTGCCTTCGAAAGGGGAGTTATAATGTCAAGCTGCATTTTGCTGAAATAATGTATTCTGATGACCGGAATTTTAGTAGTCTGGGGAGGCGTATATTTGATGTCTCAATTCAAGGAAATTTAGTTTTAAAGGACTTTAATATTGCGGAAAAAGCTGGAGGAGTTGGTAAAGGCTACACTTACGAAAATACAGATGTTATCGTTAATGGCAGCACTCTAGAGATCCACTTATACTGGGCTGGTAAAGGAACTACTGCTATTCCAGATAGAGGAGTTTACGGACCTCTTATATCTGCTATCACAGTAACACCAAGCAAGTTCTTCTACTTTGAGGTTGGGACAGGAGGCTTTTCCGCTGGAGCTATTGCTGGGATTGTGATTGCTTCATGTGTGCTAGTCATATTAGTACTTGTTATCCTTTGGATCAAAGGTTACATATGTGCAAAAGAGATCGTAGACAGTGAATTGCAAGGGCTTGAATTGCAAACGGGTTATTTCTCTTTGAGACAAATCAAATCTGCTACTGGCAACTTCGATCCTAAAAATAAGATTGGTGAAGGAGGCTTTGGACCAGTATACAAGGGAGTTCTTTCAGACGGATCCTTAATTGCTGTCAAGCAACTTTCCTCTAAATCGAAGCAAGGGAATCGTGAATTTGTCACTGAAATAGGCATGATATCTGCTTTGCAGCACCCAAATCTTGTTAGGCTTTATGGGTGTTGCATTGAAGGACATCAGTTGTTGCTAATATATGAATATATGGAAAACAATAGTCTCGCACGTGCTCTCTTTGGTCCCGAGGAACATCGTCTCCACTTAGACTGGGCAACAAGGAAGAAGATATGCATGGGAATAGCGAAGGGATTAGCTTATCTTCACGAGGAATCGAGGTTGAAAATTGTGCACAGAGATATAAAGGCTACAAATGTGCTGCTTGATAAAAATCTAACGGCAAAGATCTCTGACTTTGGCTTGGCGAAGCTTGATGAAGAGGAGAATACCCACATTAGTACTCGGATTGCTGGAACCATAGGTTACATGGCTCCTGAATATGCAATGAGGGGTTACTTAACTGATAAAGCAGATGTCTACAGCTTTGGTGTTGTGGCCTTGGAGATTGTCAGTGGAAAAAGCAACACAAATTACAGGCCAAAGGAAGAGTTTGTTTATCTTCTTGATGCATATGTCCTGCAAGAGCAAGGCAACCTTCTAGAACTTGTGGATCCGAGCCTCGGTTCAAACTATTCGAAGGAAGAGACTATGGCGATGCTCAACGTGGCACTCTTATGCACCAACCCATCTCCCACACTCAGACCCCCCATGTCTTCTGTAGTGCGCATGCTTGAAGGGAAAATTGCAGTCCAAGCACCCTTAGTCAAACGCACGACGGAGCAAGATGCAAGATTTAGGGCCTTTGAGAAGCTTTCACAAGACAGCCAAACAATAATCTCGTCAATCTCTCAAGACAGTGAGCTTCACAAAAGCATGTCAATTGATGGGCCTTGGGTTGATTCCTCAGTTTCTGTTCAGAGTCAAGATGAAACCCGTGACCATTCTTCGTCAAGTAAGCTCTTGGGATCTTTTATATAA 1929 42.35 MLLNGFTFPTTRVSWCLQKDLPCSGNAEYHSLFINCGGRRVEIDGNQYEEDLFSEGRSNFYSVGERWGYSSTGMFMGNEHVPNLAENTFGLNLSGASFYETARLSPLSLKYYGLCLRKGSYNVKLHFAEIMYSDDRNFSSLGRRIFDVSIQGNLVLKDFNIAEKAGGVGKGYTYENTDVIVNGSTLEIHLYWAGKGTTAIPDRGVYGPLISAITVTPSKFFYFEVGTGGFSAGAIAGIVIASCVLVILVLVILWIKGYICAKEIVDSELQGLELQTGYFSLRQIKSATGNFDPKNKIGEGGFGPVYKGVLSDGSLIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVRLYGCCIEGHQLLLIYEYMENNSLARALFGPEEHRLHLDWATRKKICMGIAKGLAYLHEESRLKIVHRDIKATNVLLDKNLTAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDAYVLQEQGNLLELVDPSLGSNYSKEETMAMLNVALLCTNPSPTLRPPMSSVVRMLEGKIAVQAPLVKRTTEQDARFRAFEKLSQDSQTIISSISQDSELHKSMSIDGPWVDSSVSVQSQDETRDHSSSSKLLGSFI 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5156089 5160466 - Bma004129.1 Bma10g00458 89521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00458 642 ProSiteProfiles Protein kinase domain profile. 291 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00458 642 MobiDBLite consensus disorder prediction 616 642 - -
Bma10g00458 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Bma10g00458 642 Gene3D Transferase(Phosphotransferase) domain 1 367 583 - -
Bma10g00458 642 SUPERFAMILY Protein kinase-like (PK-like) 275 562 IPR011009 -
Bma10g00458 642 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 623 - -
Bma10g00458 642 Pfam Protein tyrosine and serine/threonine kinase 294 561 IPR001245 GO:0004672|GO:0006468
Bma10g00458 642 SMART serkin_6 291 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma10g00458 642 Gene3D - 29 219 - -
Bma10g00458 642 Pfam Malectin domain 32 213 IPR021720 -
Bma10g00458 642 PANTHER - 11 623 - -
Bma10g00458 642 CDD STKc_IRAK 297 563 - -
Bma10g00458 642 Gene3D Phosphorylase Kinase; domain 1 260 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00458 Bma-Chr10:5156089 Bma10g01197 Bma-Chr10:42494915 0 dispersed
Bma10g01200 Bma-Chr10:42553032 Bma10g00458 Bma-Chr10:5156089 1.93E-138 dispersed
Bma13g00932 Bma-Chr13:39816946 Bma10g00458 Bma-Chr10:5156089 7.49E-115 dispersed
Bma10g00458 Bma-Chr10:5156089 Bma10g00460 Bma-Chr10:5186200 0 proximal
Bma10g00458 Bma-Chr10:5156089 Bma13g00923 Bma-Chr13:39663759 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66730 PF07714 PK_Tyr_Ser-Thr 8.80E-50 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00458 - - csv:101211151 940.643