Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00461 ATGAAGATTCAATGCAACGTCTGCGAGGCGGCGGAGGCGCAGGTTCTATGTTGCGCTGACGAGGCGGCGCTATGCTGGGCTTGCGACATGAAGGTTCACGCTGCCAACAAACTGGCTAGCAAGCACCAGAGGGTTCCTCTCTCTGGCTCTTCTTCCCAAATGCCCAAATGTGACATTTGCCAGGAGATGGGTGGCTACATCTTTTGTTTGGAGGATCGAGCTTTACTTTGCCGAAAATGCGATGTCGCCATCCACACGGCGAATACTTACGTGTCGGCTCATCAGAGGTTTCTTCTCACTGGTGTCAAAGTCTGTCTTGAACCGGCAGGACCTCCTGCTTCCTCTTCCGAATCAAACCCCCATATGGGAGAGAAAGTGATCGAACTGAAGTCCGGCTCAGGGCCCCCGAGGCGCTTCTCAACACCGTCAGTTGGTGAATTCGGTCAACAGTTGCCTGTAAGCTCTCGTGGGGTTGGGGACCATGCGCAAACTAAGATCTCTACGCATAATGGAGGATTCGTATCGGGTGGGCTTCCCTTATGGCAATTAGACGAGTTAATGGCGATGACAGGATTCGGTCGAAACTATGGCTCTGGCTCTGGCTCTATGGACAATGATTCATCAAAGGCCGATAGCGGTAAGCTCGGGGATTCTGATTCGTCCATTCTAAGAACAGGTGTGGAAGATGTTGATGACGACGAGTGCTTGGGTCAGGTACCGGATGCTTCGTGGGCAGTTCCTCACAACCCATCCCCGCCTACGGCCTCGGATAGCTCGGTCTATGTTCCCGACATATACAGCTCACCCGAGCAAAATCCCCACCATTATCGACGAAATGGTATGGAATCGAAACGCAGAAGACAATTCTAG 870 52.41 MKIQCNVCEAAEAQVLCCADEAALCWACDMKVHAANKLASKHQRVPLSGSSSQMPKCDICQEMGGYIFCLEDRALLCRKCDVAIHTANTYVSAHQRFLLTGVKVCLEPAGPPASSSESNPHMGEKVIELKSGSGPPRRFSTPSVGEFGQQLPVSSRGVGDHAQTKISTHNGGFVSGGLPLWQLDELMAMTGFGRNYGSGSGSMDNDSSKADSGKLGDSDSSILRTGVEDVDDDECLGQVPDASWAVPHNPSPPTASDSSVYVPDIYSSPEQNPHHYRRNGMESKRRRQF 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5244910 5246506 - Bma004132.1 Bma10g00461 89524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00461 289 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 288 - -
Bma10g00461 289 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bma10g00461 289 CDD Bbox1_BBX-like 5 47 - -
Bma10g00461 289 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bma10g00461 289 MobiDBLite consensus disorder prediction 199 289 - -
Bma10g00461 289 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Bma10g00461 289 MobiDBLite consensus disorder prediction 143 157 - -
Bma10g00461 289 MobiDBLite consensus disorder prediction 249 266 - -
Bma10g00461 289 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 288 - -
Bma10g00461 289 Gene3D Classic Zinc Finger 1 93 - -
Bma10g00461 289 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bma10g00461 289 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bma10g00461 289 MobiDBLite consensus disorder prediction 129 157 - -
Bma10g00461 289 CDD Bbox1_BBX-like 56 99 - -
Bma10g00461 289 MobiDBLite consensus disorder prediction 199 219 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma10g00461 Bma13g00920 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01437 Bma-Chr6:51082648 Bma10g00461 Bma-Chr10:5244910 8.08E-45 dispersed
Bma10g00461 Bma-Chr10:5244910 Bma12g00543 Bma-Chr12:21913214 1.45E-36 dispersed
Bma10g00461 Bma-Chr10:5244910 Bma13g00920 Bma-Chr13:39618056 2.92E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57929 PF00643 zf-B_box 6.20E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00461 - - csv:101209756 349.362