Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00467 ATGATGTCTATGGCTTGCCAGAGTCTTGATTTTGGAAGGGGTTCGGTTGATTTGGGTTCTTATGGTTGTTCTTCTTATGCTTCGTTTGATCGAGCGTCATTGAGAAATTATGTAAATGGAAGTTCTGAAGGTGGAAGAAGAAGTTGTGGCGGTCGAAAACTGGTCTGTCGCCGAAGAGTCATTGCTCGGTGTAAAGTTTCCTCCACCAAGACACCCGAAACTCTTATCAATGGTGTTTCTCAAGGTCCTCCACCATTGTTGGATTTGAGAAAAGAGTCAAGAGGCTCAATTTCCTTAGCAAATTTGTTTGAAGTCGTTGCCGATGACCTCCAGATACTGAACCAGAATCTTCTGTCTATTGTTGGTGCAGAAAACCCAGCTTTGATGTCTGCTGCTCAGCAGATATTTGGTGCTGGTGGGAAGAGAATGAGACCTGCTTTGGTGTTTCTCGTGTCTAGAGCGACAGCTGAACTTGCTGGGTTGAAGGAACTTACGGTGGAGCATCGGCGATTGGCAGAGATCATTGAGATGATTCATACTGCAAGTTTAATCCATGACGATGTACTAGACGATAGTGACGTGAGAAGAGGTAAGCCTGTTTGTACATTTTCAAATAAGGTTTTTCTCTGGTGTCCTGCTAAAAAACCGGTGGATTTCGAGCGGTTTTTTTATGTGCACATTTTTTCAGGGGAAGAGACTGTACATCAAATATACGGCACGAGAGTTGCAGTATTAGCCGGCGACTTCATGTTCGCACAATCATCGTGGTACCTGGCAAATCTCGAAAACCTTCAAGTTATCAAGCTCATTAGCCAGGTCATTAAAGATTTTGCAAGTGGCGAAATAAAACAGGCATCGAACCTATTCGACTGCAATCTACAACTCGATGAGTACCTGATCAAAAGCTATTACAAAACCGCCTCTTTAATTGCAGCCAGTACGAAAGGAGCTGCTATTTTTAGTGGGGTTGACAAAGAAACTACCGGAAAAATGTACGAATTCGGAAAAAATCTCGGCCTTTCTTTCCAAATCGTGGATGACATCTTGGATTTTACGCAATCTGCCGAGCAGCTGGGAAAGCCGGCAGGGAGTGATTTGGCCAAAGGAAATCTCACTGCCCCTGTTATATTTGCTTTGCAACAAGTTCCAAAATTAAGAGACATAATCGAGTCAGAATTTAGCGAACCGGGTTCTCTCGATGAAGCCGTCAAATTAGTCAAGAGCAGTGGGGGCATTAAGAGAGCTCGAGAACTTGCCAAACACCACGCCGGTCTTGCCGTCCAAAATCTTCGATGCCTTCCTCAAAGCTTCCTTCGATTGGCTCTCGAGGATATGGTGATGTATAATCTCGAACGGATCGACTAG 1365 44.32 MMSMACQSLDFGRGSVDLGSYGCSSYASFDRASLRNYVNGSSEGGRRSCGGRKLVCRRRVIARCKVSSTKTPETLINGVSQGPPPLLDLRKESRGSISLANLFEVVADDLQILNQNLLSIVGAENPALMSAAQQIFGAGGKRMRPALVFLVSRATAELAGLKELTVEHRRLAEIIEMIHTASLIHDDVLDDSDVRRGKPVCTFSNKVFLWCPAKKPVDFERFFYVHIFSGEETVHQIYGTRVAVLAGDFMFAQSSWYLANLENLQVIKLISQVIKDFASGEIKQASNLFDCNLQLDEYLIKSYYKTASLIAASTKGAAIFSGVDKETTGKMYEFGKNLGLSFQIVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALQQVPKLRDIIESEFSEPGSLDEAVKLVKSSGGIKRARELAKHHAGLAVQNLRCLPQSFLRLALEDMVMYNLERID 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5287820 5293976 + Bma004138.2 Bma10g00467 89530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00467 454 Gene3D Farnesyl Diphosphate Synthase 97 453 IPR008949 -
Bma10g00467 454 SFLD Isoprenoid Synthase Type I 131 444 - -
Bma10g00467 454 ProSitePatterns Polyprenyl synthases signature 1. 183 197 IPR033749 -
Bma10g00467 454 ProSitePatterns Polyprenyl synthases signature 2. 338 350 IPR033749 -
Bma10g00467 454 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2 199 - -
Bma10g00467 454 SUPERFAMILY Terpenoid synthases 111 435 IPR008949 -
Bma10g00467 454 CDD Trans_IPPS_HT 123 452 IPR000092 GO:0008299
Bma10g00467 454 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 229 454 - -
Bma10g00467 454 Pfam Polyprenyl synthetase 127 405 IPR000092 GO:0008299
Bma10g00467 454 PANTHER SOLANESYL DIPHOSPHATE SYNTHASE 2, CHLOROPLASTIC 2 199 - -
Bma10g00467 454 PANTHER SOLANESYL DIPHOSPHATE SYNTHASE 2, CHLOROPLASTIC 229 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00467 K05356 SPS, sds; all-trans-nonaprenyl-diphosphate synthase [EC:2.5.1.84 2.5.1.85] - pop:7459128 629.402
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01157 Bma10g00467 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00771 Bma-Chr7:22418798 Bma10g00467 Bma-Chr10:5287820 2.18E-75 dispersed
Bma09g00356 Bma-Chr9:30503049 Bma10g00467 Bma-Chr10:5287820 9.04E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g6 . . . . Bpe09g00274 Bpe08g00996 Bma10g00467 . . Cmo04g00701 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1012 . . . . . Blo07g01003 Blo10g00715 . . . Bpe03g00882 Bma07g01157 . . . . . . Car04g00605 Car16g00425 . Cpe01g00589 . . . . . . . Cla07g00994 Cam07g1069 Cec07g1141 Cco07g1119 Clacu07g1042 Cmu07g1034 Cre07g1410 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006158 2 1 2 1 2 1 2 1 1 2 0 1 1 1 2 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00467 Bma_Chr10 FPKM 16.34157 15.850579 26.344965 27.148548 22.86577 21.969694 23.676073 42.610237 42.419216 38.241581