Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00474 ATGCGGTACTTTAATGTGATGATACTAGGCCCAACCCAGTCCCCCTACGAAGGCGGGGTTTTCAAGTTGGAACTATTTTTGCCTGAAGAATATCCTATGGCTGCTCCCAAGGTCCGATTTCTGACCAAAATATATCATCCCAACATTGACAAGCTTGGGAGGATATGCCTTGATATTCTGAAGGACAAATGGAGTCCCGCTCTCCAAATAAGAACTGTGCTTTTGAGTATTCAAGCTTTGCTGAGTGCTCCAAATCCTGACGATCCACTTTCTGAGAACATTGCGAAGCATTGGAAGACAAATGAAGCTGAAGCCGTTGAAACAGCCAAGGAATGGACCCGTTTATACGCAAGTGGTGCTTGA 363 45.18 MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5444776 5446477 - Bma004146.1 Bma10g00474 89537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00474 120 Gene3D Ubiquitin Conjugating Enzyme 1 120 IPR016135 -
Bma10g00474 120 Pfam Ubiquitin-conjugating enzyme 2 112 IPR000608 -
Bma10g00474 120 SUPERFAMILY UBC-like 1 118 IPR016135 -
Bma10g00474 120 PANTHER BNAC02G25260D PROTEIN 1 117 - -
Bma10g00474 120 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 45 60 IPR023313 -
Bma10g00474 120 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 118 IPR000608 -
Bma10g00474 120 SMART ubc_7 1 118 - -
Bma10g00474 120 CDD UBCc 4 113 IPR000608 -
Bma10g00474 120 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00474 K10580 UBE2N, BLU, UBC13; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23] - tcc:18594172 248.054
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00474 Bma-Chr10:5444776 Bma12g01189 Bma-Chr12:44721038 5.39E-42 dispersed
Bma10g00474 Bma-Chr10:5444776 Bma13g00930 Bma-Chr13:39780582 1.19E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g121 . . . . . . Bma10g00474 . Cmo16g00477 Cmo04g00613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00965 Blo10g00734 . Bda12g00818 . Bpe03g00854 . . . . . Cma04g00573 Cma16g00442 Car04g00543 . Cpe14g00372 Cpe01g00518 . . . . . . . . . . . . . . Lsi05g00796 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006747 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00474 Bma_Chr10 FPKM 2.828704 2.730631 4.591002 4.362952 0.0 0.0 0.0 8.347488 12.91546 10.841014