Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00481 ATGGATTCAGGACCACTAGGTGACGATGGCAGAAGAAAGAATCAAGGTTGGCAAGAAAATGAAAAATTACTTTCTAAGAATCACCAAATCAATGTTAAGAATTCCAGTCATCTCCCTCGGGAATCCTCACGAACCTTTGTCGCTACCAGCCCGTCGAATGGCGGTAGTAATTCGTTGCCGCGGCCTCGGAAAAGATCGAGGGTTGATGATCCGATGATTTCTGGCAATTTTTCGACGGATAATCGCATTAGGATGCCGGCTAGCGACGATGGTGTGCCGGGATATACCAGGATCGAGGACCGGGTTAAGATAAGTTTGGGTTTGAAGTCGAAGATGGCCATCAACGAACTTAAGAGGAAGTTGAAGAGCGAACTGGACCAGGTGAGGAGTGTGGCGAAGAAGCTTGAAGCGAAGGAGTCGAAGCTCCGTGGTTGCTTGGCTGCTGAGTATAGTCAATCGCAATTTTCTTCCAATATTGTTGCGGAAAAGGTTGGAAGAGCCATGAACTCATATTCGGAGGTTGGTTCGGTGGAAGTGCAGGAATCGATACCAGGTCTTGTTGCTGCAGAGAAAAATACTGCTGTGGAGAAGAAGAATGTGCCAAAGACAAGTAAGTCTAAATCAAATTCAGAATTTGTTCATGGAAAAGCTAAGTCCACCCCACAAGATGGTGAGTACAATGGATTTGGAGTGGGTAACGATCAAACTCCAAGTCCATTGTTTAAAAGTTGCAGCAATTTGCTTGCAAAATTAATGAAGCATAAGCATGGTTGGGTGTTCAATGTTCCTGTCGATGCGAAGCGGTTAGGGCTTCATGATTATTTTAAGATAATTAAAAAACCGATGGATTTAGGCACAGTAACGACAAGGCTAAACAAGAACTGGTACAAGTCACCTGGAGAGTTTGCAGAGGATGTGAGACTTACATTTAGGAATGCTATGTTGTATAATCCAAAAGGACAGGATGTACATATAATGGCAGAACAGTTGTTGACGATATTTGAAGAGAAATGGGCCAGTATGGAAACTGAATATAAGTTGACTAAGAGATCTAAAATGGATTGTCGTGCAATTTTGCCCAAACCCACGTCTAGACACGTTCCATCTCCCACTGCTCTTCCATCTCCTACTGCAATGGAGGAACCAACTATAGGTAGATCACAGTCTACTGCAAAGACTCCTAATCGACCACAATCTATGACAAAACCTACAGATTCCCAACTGAAATCTCCTAGCTTCGGTAAGCCTTGTCAGAAGAAAGCTTCGAAGAAACCAAATGCAAAGGTTTCTGAAAAAAGGGATATGACTTACGAAGAAAAGCAGAAGCTGAGCGCAAGTCTTCAGAATTTACCTTCAGAGAAGCTAGATCAGGTTGTCCAAATTATAAAGAAGAGGAATCAGGGACTCTTCCAAAATGATGATGAGATTGAGGTTGACATTGCTAGTGTAGATTCGGAAACCCTGTGGGAGTTGAATAGATTTGTGACTAATTATAAGAAGACCTTGAGTAAGAATAGGAGAAAAGATGATGTACCTCTTCAATCCAGCAAAGAACCTAAGGTGAGTATTATAAGATAA 1578 42.4 MDSGPLGDDGRRKNQGWQENEKLLSKNHQINVKNSSHLPRESSRTFVATSPSNGGSNSLPRPRKRSRVDDPMISGNFSTDNRIRMPASDDGVPGYTRIEDRVKISLGLKSKMAINELKRKLKSELDQVRSVAKKLEAKESKLRGCLAAEYSQSQFSSNIVAEKVGRAMNSYSEVGSVEVQESIPGLVAAEKNTAVEKKNVPKTSKSKSNSEFVHGKAKSTPQDGEYNGFGVGNDQTPSPLFKSCSNLLAKLMKHKHGWVFNVPVDAKRLGLHDYFKIIKKPMDLGTVTTRLNKNWYKSPGEFAEDVRLTFRNAMLYNPKGQDVHIMAEQLLTIFEEKWASMETEYKLTKRSKMDCRAILPKPTSRHVPSPTALPSPTAMEEPTIGRSQSTAKTPNRPQSMTKPTDSQLKSPSFGKPCQKKASKKPNAKVSEKRDMTYEEKQKLSASLQNLPSEKLDQVVQIIKKRNQGLFQNDDEIEVDIASVDSETLWELNRFVTNYKKTLSKNRRKDDVPLQSSKEPKVSIIR 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5678511 5680088 - Bma004168.1 Bma10g00481 89544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00481 525 MobiDBLite consensus disorder prediction 1 89 - -
Bma10g00481 525 ProSiteProfiles NET domain profile. 425 506 IPR027353 -
Bma10g00481 525 MobiDBLite consensus disorder prediction 503 525 - -
Bma10g00481 525 ProSiteProfiles Bromodomain profile. 252 324 IPR001487 GO:0005515
Bma10g00481 525 PANTHER TRANSCRIPTION FACTOR GTE4-LIKE ISOFORM X1 7 518 - -
Bma10g00481 525 SUPERFAMILY Bromodomain 233 344 IPR036427 GO:0005515
Bma10g00481 525 MobiDBLite consensus disorder prediction 197 212 - -
Bma10g00481 525 MobiDBLite consensus disorder prediction 1 19 - -
Bma10g00481 525 Gene3D - 230 357 IPR036427 GO:0005515
Bma10g00481 525 PANTHER OSJNBA0053K19.4 PROTEIN 7 518 - -
Bma10g00481 525 Coils Coil 114 138 - -
Bma10g00481 525 MobiDBLite consensus disorder prediction 356 434 - -
Bma10g00481 525 Gene3D - 429 508 IPR038336 -
Bma10g00481 525 Pfam Bromodomain 244 328 IPR001487 GO:0005515
Bma10g00481 525 Pfam Bromodomain extra-terminal - transcription regulation 435 496 IPR027353 -
Bma10g00481 525 CDD Bromo_plant1 240 338 IPR037377 -
Bma10g00481 525 PRINTS Bromodomain signature 287 305 IPR001487 GO:0005515
Bma10g00481 525 PRINTS Bromodomain signature 271 287 IPR001487 GO:0005515
Bma10g00481 525 PRINTS Bromodomain signature 305 324 IPR001487 GO:0005515
Bma10g00481 525 PRINTS Bromodomain signature 255 268 IPR001487 GO:0005515
Bma10g00481 525 MobiDBLite consensus disorder prediction 197 226 - -
Bma10g00481 525 MobiDBLite consensus disorder prediction 20 60 - -
Bma10g00481 525 MobiDBLite consensus disorder prediction 381 413 - -
Bma10g00481 525 SMART bromo_6 233 343 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00481 - - - zju:107432537 450.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00032 Bma-Chr8:493690 Bma10g00481 Bma-Chr10:5678511 2.29E-76 dispersed
Bma10g00481 Bma-Chr10:5678511 Bma12g00714 Bma-Chr12:32073745 1.26E-113 dispersed
Bma10g00481 Bma-Chr10:5678511 Bma02g01398 Bma-Chr2:56232808 1.53E-114 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g137 . . . . . . Bma10g00481 . Cmo16g00449 Cmo04g00605 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1035 Cone15ag1021 . . . . . . Bda05g00783 . . Bpe03g00850 . . . . . Cma04g00565 Cma16g00417 Car04g00536 Car16g00382 Cpe14g00351 Cpe01g00510 . . . . . . . Cla07g00947 Cam07g1022 Cec07g1092 Cco07g1071 Clacu07g0991 Cmu07g0987 Cre07g1362 . . Chy07g00961 Cme07g01330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003323 2 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 9 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00481 Bma_Chr10 FPKM 17.990343 20.353533 20.524435 19.576107 15.531823 16.667364 15.50814 25.79628 24.071465 21.651056