Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00484 ATGCAGAATGAAGTTAGAACTCGTCGACTATGCATGGTCACAGACTATGCTACTCAACAAAAGAAACTGGAAAATCAGTTAAAACTTGATGCTAAGCTTCATGAACTCGAGGTGGAGTGGTGTGGTGGGTCGGAAACAATGGAGGAAATTCTTTCTAGGATTCACAATAGAGAAGAAGCAGCAGCTAGACGAGAGAGAGCCATGGCTTATGCATTCTCTCATCAGTGGAGAGCAAACTCAATATTGCATGTGAGCCAAGCATGTTACAACATGGACAAAGAAAACTGGGGATGGAGCTGGAAACAGAGGTGGATAGCTGCTAGGCCATGGGAGATCAAAGCTCATGCTCATCCCACCATTCCTAAGAAACTACAAACCAAAATCTACTCTAAATCTCCTCTCTCCAATGGAAAACACTCTCTCAAACCCATTAAATTAGTCTAA 444 42.79 MQNEVRTRRLCMVTDYATQQKKLENQLKLDAKLHELEVEWCGGSETMEEILSRIHNREEAAARRERAMAYAFSHQWRANSILHVSQACYNMDKENWGWSWKQRWIAARPWEIKAHAHPTIPKKLQTKIYSKSPLSNGKHSLKPIKLV 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5714220 5714917 - Bma004171.1 Bma10g00484 89547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00484 147 PANTHER IQ-DOMAIN 5-RELATED 1 142 - -
Bma10g00484 147 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00484 - - - cmo:103492919 211.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00484 Bma-Chr10:5714220 Bma11g01010 Bma-Chr11:45765929 3.41E-53 dispersed
Bma10g00484 Bma-Chr10:5714220 Bma07g01423 Bma-Chr7:50036173 5.07E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g140 . . . . . . Bma10g00484 . Cmo16g00447 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1038 Cone15ag1024 . . . . Blo07g00960 . Bda05g00781 . . Bpe03g00849 . . . . . . Cma16g00415 . Car16g00380 Cpe14g00349 . . . . . . . . Cla07g00945 Cam07g1020 Cec07g1090 Cco07g1069 Clacu07g0989 Cmu07g0985 Cre07g1360 . . Chy07g00958 Cme07g01328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g01643 . 47 376 IQD Protein Family AT5G03040 57.2 3.0e-87 319.3
Bma10g00020 . 1 238 IQD Protein Family AT5G03040 56.3 1.1e-57 221.1
Bma08g00947 CCT,ECH 1 469 IQD Protein Family AT3G52290 51.2 1.1e-91 334.0
Bma07g01423 BCT,CCT 1 387 IQD Protein Family AT3G22190 58.7 2.0e-98 356.3
Bma14g00379 BCT,CCT 1 391 IQD Protein Family AT3G22190 55.0 5.2e-86 315.1
Bma01g02209 . 1 433 IQD Protein Family AT2G26180 57.3 1.2e-114 410.2
Bma11g01010 . 1 274 IQD Protein Family AT2G33990 52.6 8.6e-63 237.3
Bma10g00484 . 1 133 IQD Protein Family AT3G15050 63.2 6.7e-44 174.5
Bma02g01259 . 247 675 IQD Protein Family AT4G00820 57.3 2.6e-106 382.9
Bma04g00927 . 1 231 IQD Protein Family AT4G00820 57.3 3.6e-52 203.0
Bma02g01259 . 254 675 IQD Protein Family AT1G01110 55.1 1.3e-102 370.5
Bma04g00927 . 1 231 IQD Protein Family AT1G01110 53.1 8.8e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00484 Bma_Chr10 FPKM 0.426789 0.736043 0.150285 0.254027 2.42227 2.811427 2.331022 0.177878 0.136111 0.0