Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00501 GAGATGGGTGGTTTGCGGGTCGAAAACGCATCGGCAGCCTTAGCTCTGCATAATTCCAAGCAGGGGCAAGAATCAGCCGTGATTAAGTCCGGCTCGGAGACCAAACCCAAGAAGAAAATATGCTGTGCTTGTCCAGACACTAAGAAACTCCGAGATGAATGCATCGTGGAACATGGGGAGAAGGCTAGTACGAAATGGATCGAGGCACATCTCAAGTGCCTCCGTGCTGAGGGATTCAACGTGTAA 246 50.81 EMGGLRVENASAALALHNSKQGQESAVIKSGSETKPKKKICCACPDTKKLRDECIVEHGEKASTKWIEAHLKCLRAEGFNV 81
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5904333 5904578 + Bma004191.1 Bma10g00501 89564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00501 81 Gene3D CytochromE C oxidase copper chaperone 15 81 - -
Bma10g00501 81 PANTHER CYTOCHROME C OXIDASE COPPER CHAPERONE 2 81 - -
Bma10g00501 81 Pfam Cytochrome C oxidase copper chaperone (COX17) 37 81 IPR007745 GO:0005507|GO:0005758|GO:0016531
Bma10g00501 81 PANTHER CYTOCHROME C OXIDASE COPPER CHAPERONE 2 81 IPR007745 GO:0005507|GO:0005758|GO:0016531
Bma10g00501 81 SUPERFAMILY Cysteine alpha-hairpin motif 29 81 IPR009069 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00501 K02260 COX17; cytochrome c oxidase assembly protein subunit 17 - cpap:110812310 126.331
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00501 Bma13g00957 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00501 Bma-Chr10:5904333 Bma13g00957 Bma-Chr13:40740233 1.11E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g224 . . . . . . Bma10g00501 Bma13g00957 . Cmo04g00969 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1065 . . Csa03g00632 . . . . Bda05g00769 . . Bpe03g00835 . . . . . Cma04g00902 . . . . . Bhi11g00775 Tan01g1556 . . . . . . . . . . . . . . Chy06g01694 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005211 3 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00501 Bma_Chr10 FPKM 3.604358 3.874259 13.572882 14.703294 32.770039 37.448982 34.3111 13.404277 13.237575 15.33864