Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00517 ATGATGTTATCCGCATCCCCCTCCATGGTAGTGCGGAGCTCGCTAGAGGAAATGCTGGATTCATTGCGGCAGAGAGATGAAAATGAGAAGCCTAAAGACTTGCCGCCTGCACTACCATCACGTCCTATTTCAATAGGTCGGCTTCCCCCTGCAAGACGATCTTTGCCGAGTAACTTCCGTGTTAGCAATGAGGGTGAATCACAGTGCTCTGTTTGTGTGTTCAATGAAAAGGAAGATTCAAATAGGAAAGAGAAAGATGTACGATACGACAGAGGTAGATTTGGATGCAAAAAAATGAGGAAAGATCAAAATGATGAGTCGCCTTATATGTGGAAATATGGATCCGATAAACTTGATCAAGTTAACTTTGATGGTGCTTCTGGTATGTCTTCTGCTTCACAGTTTAATGTTCGGAGGTCAGACTGGGATGACACCATTGATTATTACATTAAGAAGAGGCTTCATGTTTGGTGTCAACTTCCAAGCGGCCAGTGGGCTGCTGGAACAATTAAATCGGCATCAGGAGATGAAGTGTTTATCATGCTTTTCAACAAAGACGTTGTAAAAGTACCTGCGGAAAGCCTTTTACCTGCCAACCCTAGTATTCTAGATGAAGTTGATAACCTTGTACAGCTTAGTTTCCTAAATGAGCCTTCTGTACTTCACAATCTACGGAAGAGATACTCCCTCACTAAGATTTATAGTAAAGCAGGGCCTGTTTTGATTGCACTGAATCCCTTCAAAGATGTCAAAATTTATGGAAATGATTTTGTCGTAGCTTACAGGGAGAAGCTTACAGATAGTCCTCATGTGTTTTCTGTGGCAGAATGTGCTTATATTTTATTCATATTAAACTCACATGTTTTGTTACTAAATGACCACCGTGACGTTTTTTTTTCCAGTGGGCAAAGTGGATCTGGAAAAACTGAGACAGCAAAAATTGCACTCCAATACTTGGTTGCAGTTGCTGGAGATAGTTATGGGATGGGTAACAGAATCTTGCAATCAAATAGTATATTAGAAGCATTTGGGAATGCTAAAACATTTCATAATGACAATTCCAGTCGTTTTGGAAAGGTGATTCAAGTTCAATTTGGCTCCATGGGAAAGATATGTGGTGCTAAATTCCAAACCTGTAAGAATTTTTCTGAGATCATTGTCTGTTCTGGGCAGTCAAGGGTAGTTCAGTTTGCCAATGGAGAGAGATCATTCCACATCTTTTATCAACTTTGTGCTGGTGCTCCGTCCCTTCTTCGAGAAAAACTAAACCTTAATACGGCTAGCGAGTACAAGTATCTTAATCAGAGTGAGTGCTTGAGAATTGACGGTGTTGATGACTCATGGAAGTTTCAGAATCTCCAGGAAGCCCTTGACATTATTCAAATTTGCAAGGAAGATAAAGAGCATATGTATTCAATGCTTGCCGTGGTGTTATGGTTAGGAAACATATCATTTCAAGCGAATGATGGGGAAAATCATGTTGAGGTGGTCACTGACGAAGCATTTACGAATGTGACCAAGCTTTTAGGTTGCAAATCTGAAGACCTTATGTTAGTTTTATCAAAACATAAAAGCCCAGCTGACAAAAATAGTATGGGAAAAAAGCTAACATTACAACAGGCAATCAATTCAAGAGATGCATTTGCCATATTCATCTACGCAAGCTTGTTTGACTGGCTTGTGGAGCAAGTTAATATGTCACTAGAAGTGCAAAAGAAGCATTCTGGAAAATCCATTAGCATATTTGATATTTCTGGGTTTGAGTCATTTAAGAAAAATAACTTTGAACAATTTTGCATAAATTATGCAAACGAGAGACTGCAACAGCATTTCAACAGACATCTTTTAAAACTTGAGCAAGAGGACTGCGAACGGGATGGAATTGGTTGGAATAGAATTATGTTTAAAGACAACCAAGAGTGCTTGAATCTCATTGAGCAGAAACCTCTTGGACTACTAGCTTTACTGGATGAGGAATCACATCTCCCCAAGGCTACCGATCTAACATTTGCAAACAAACTAAAGCATCACTTGAATGGAAATCTTTGCTTTAAAGGAGAAAGAGGAAGAGCTTTTGGAATTTTTCATAATGCTGGAGAGGTAATATACGATACAAATGGATTTTTGGAAAAGAACAAAGATTTATTACCCTATGCGTGCATCGAACTCTTGTCATCAAGTAATTGCAAAGCACTAAAATCATTTGGATCCTCAGTGCCTAACCATTCTGAGATACCAACCATTGGTATGTGTCAGAGAGGCGTATTTGAGTTTTCAAAGCCAACCGTTGGTGCAAGTTTTAAGGAACAATTGTTTAAAGTATTCCATAGTTTGGAGAGTACTAGTCCTCACTTCATCCACTGCATAAAGCCAAATGTCAAACGGGTCCACGATTCATTTGAGGAGGAACTTGTTATACAACAGCTCAAGTGCTGTAATGCTTTTGAGGTCGTCCAGGTATCGAAATATGGATATCCGACTCGACTGACACATCAAAAGTTTGCAGAAAGGTACGGTTTCTTATTGGAGGAGTCCAACACGTCTCACAATCCATTAAACAGATCGGTTGCTGTCTTCCAACAATTTAATTTTCTCCCTGAAATGTATCAAGTTGGTTATACGAAATTGTTTTTCCGGACTGGGCAGATAGAGATATTGGAGGAAAAGAGACAACAGGTACTACGTAGCATACTAAGGTTGCAAAAATTCTTTCGTAGTCGTCAGGCTCGCAATTATTTTCAAGAACTCAAGAATGGAGCCACAATGTTACAATCATTTGTTCGCGGTGAAATAGCAAGAAGGAAAATTACAGTTGTAATAAAGTGGTGCACATCTACTGTTCCTGATAAAACTGATGAGTTGCAGGCTGTTATACAGTTACAATCAGCAATCCGTGGTTTACTAGTACGGAAACGATATAAAATCGTGCATTACTTGAAGAAATTGTATCCAGAGATTCAAGAATCTAAACAAAAGTCAGGCAGGAAAAGTTTTGAAGATAAAAGACAAAAGCAAGTTCAAGTTACGCCTTCTGTTTTGGCAGAGCTTCAAATACGGATTCTTAAAGCAGAAGCAAATTTGCAGACAAAGGAAGAGGAAGCGTCTAGACTGCAAGAGCAAGTACAACAATACGAGGCTAGGTGGTCAGAATATACAGCAAAGATGAAATCAATGGAGGAAATTTGGCGAAAGCAGATGTCATCTTTGCAAATGACTCTTGCTGGAGGACGAAGAAGCCTTGCTGCAGAATTTAACGCCAATCCACCTGGAAGAGTCGAGGCCCCATCACCCCAATATTATGACTCCGAAGATACCATGTCGATGGGATCAAGAACTCCTGGTTGCAGCACGCCCCTCAAATTTTCAACTGCCATTTCCGAAACTGGAACAGGACGTGATACTAACGGAGCTGTGTGTGCAGTTGCGAAACTGGTAAAGGAATTTGAGCGAAAAAAGCAGAGTTTCGACGATGATGTTAAGGTTCTAGTTGAAGCAAAATCAGGGCAATCAGGTTCAGTAATGAATCCGGAGAAAGAAATTAGTAATCTCAGACATAGATTCGACTCATGGAAGAAAGAGTACAAAGTTAGGCTACGAGAGGCGAAAGCAAATATACGAAAGCTCGGGAATTCAGATGAAAGGAGTAGTAGGAGAAAGTGGTGGGGAAAATTAAGCTCAAGAGCATCATAA 3690 39.89 MMLSASPSMVVRSSLEEMLDSLRQRDENEKPKDLPPALPSRPISIGRLPPARRSLPSNFRVSNEGESQCSVCVFNEKEDSNRKEKDVRYDRGRFGCKKMRKDQNDESPYMWKYGSDKLDQVNFDGASGMSSASQFNVRRSDWDDTIDYYIKKRLHVWCQLPSGQWAAGTIKSASGDEVFIMLFNKDVVKVPAESLLPANPSILDEVDNLVQLSFLNEPSVLHNLRKRYSLTKIYSKAGPVLIALNPFKDVKIYGNDFVVAYREKLTDSPHVFSVAECAYILFILNSHVLLLNDHRDVFFSSGQSGSGKTETAKIALQYLVAVAGDSYGMGNRILQSNSILEAFGNAKTFHNDNSSRFGKVIQVQFGSMGKICGAKFQTCKNFSEIIVCSGQSRVVQFANGERSFHIFYQLCAGAPSLLREKLNLNTASEYKYLNQSECLRIDGVDDSWKFQNLQEALDIIQICKEDKEHMYSMLAVVLWLGNISFQANDGENHVEVVTDEAFTNVTKLLGCKSEDLMLVLSKHKSPADKNSMGKKLTLQQAINSRDAFAIFIYASLFDWLVEQVNMSLEVQKKHSGKSISIFDISGFESFKKNNFEQFCINYANERLQQHFNRHLLKLEQEDCERDGIGWNRIMFKDNQECLNLIEQKPLGLLALLDEESHLPKATDLTFANKLKHHLNGNLCFKGERGRAFGIFHNAGEVIYDTNGFLEKNKDLLPYACIELLSSSNCKALKSFGSSVPNHSEIPTIGMCQRGVFEFSKPTVGASFKEQLFKVFHSLESTSPHFIHCIKPNVKRVHDSFEEELVIQQLKCCNAFEVVQVSKYGYPTRLTHQKFAERYGFLLEESNTSHNPLNRSVAVFQQFNFLPEMYQVGYTKLFFRTGQIEILEEKRQQVLRSILRLQKFFRSRQARNYFQELKNGATMLQSFVRGEIARRKITVVIKWCTSTVPDKTDELQAVIQLQSAIRGLLVRKRYKIVHYLKKLYPEIQESKQKSGRKSFEDKRQKQVQVTPSVLAELQIRILKAEANLQTKEEEASRLQEQVQQYEARWSEYTAKMKSMEEIWRKQMSSLQMTLAGGRRSLAAEFNANPPGRVEAPSPQYYDSEDTMSMGSRTPGCSTPLKFSTAISETGTGRDTNGAVCAVAKLVKEFERKKQSFDDDVKVLVEAKSGQSGSVMNPEKEISNLRHRFDSWKKEYKVRLREAKANIRKLGNSDERSSRRKWWGKLSSRAS 1229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5994801 6004146 + Bma004207.1 Bma10g00517 89580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00517 1229 PANTHER MYOSIN 35 1227 - -
Bma10g00517 1229 Gene3D Kinesin motor domain 203 824 IPR036961 -
Bma10g00517 1229 Gene3D - 893 941 - -
Bma10g00517 1229 Coils Coil 1013 1054 - -
Bma10g00517 1229 Gene3D - 825 892 - -
Bma10g00517 1229 Gene3D Myosin VI head, motor domain, U50 subdomain 459 567 - -
Bma10g00517 1229 MobiDBLite consensus disorder prediction 1208 1229 - -
Bma10g00517 1229 SMART MYSc_2a 198 892 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma10g00517 1229 Gene3D - 590 781 - -
Bma10g00517 1229 Coils Coil 1191 1211 - -
Bma10g00517 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 976 IPR027417 -
Bma10g00517 1229 Gene3D - 402 458 - -
Bma10g00517 1229 PRINTS Myosin heavy chain signature 338 365 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma10g00517 1229 PRINTS Myosin heavy chain signature 234 253 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma10g00517 1229 PRINTS Myosin heavy chain signature 631 659 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma10g00517 1229 PRINTS Myosin heavy chain signature 578 606 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma10g00517 1229 PRINTS Myosin heavy chain signature 295 320 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma10g00517 1229 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 151 200 IPR004009 GO:0003774|GO:0005524|GO:0016459
Bma10g00517 1229 MobiDBLite consensus disorder prediction 1 60 - -
Bma10g00517 1229 SMART iq_5 892 914 IPR000048 GO:0005515
Bma10g00517 1229 SMART iq_5 915 937 IPR000048 GO:0005515
Bma10g00517 1229 SMART iq_5 952 974 IPR000048 GO:0005515
Bma10g00517 1229 ProSiteProfiles IQ motif profile. 895 921 IPR000048 GO:0005515
Bma10g00517 1229 PANTHER MYOSIN-2 ISOFORM X1 35 1227 - -
Bma10g00517 1229 MobiDBLite consensus disorder prediction 18 34 - -
Bma10g00517 1229 ProSiteProfiles Myosin motor domain profile. 204 891 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma10g00517 1229 Pfam IQ calmodulin-binding motif 919 935 IPR000048 GO:0005515
Bma10g00517 1229 Pfam IQ calmodulin-binding motif 955 974 IPR000048 GO:0005515
Bma10g00517 1229 Pfam Myosin head (motor domain) 206 879 IPR001609 GO:0003774|GO:0005524|GO:0016459
Bma10g00517 1229 ProSiteProfiles IQ motif profile. 916 945 IPR000048 GO:0005515
Bma10g00517 1229 ProSiteProfiles IQ motif profile. 953 981 IPR000048 GO:0005515
Bma10g00517 1229 CDD MYSc_Myo8 218 879 IPR036022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01334 Bma-Chr7:48870046 Bma10g00517 Bma-Chr10:5994801 0 dispersed
Bma10g00517 Bma-Chr10:5994801 Bma14g00299 Bma-Chr14:3715361 2.62E-79 dispersed
Bma10g00517 Bma-Chr10:5994801 Bma09g00523 Bma-Chr9:41799897 5.18E-151 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00517 K10357 - zju:107430375 1432.16