Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00518 ATGGCTTCTCAGCAAGAAATTTCTCATGCTTCACACAGTCGCTATAACGATCACGAAGGAACGGACGAAGATGAAGAAGAAGAGGAGGAGGAAGAAGAAGAAAGTTATCAAAGTGGAGACAGCAAAAAGAGAAATTGTTACAGAAATGGGTGGTCAACAGGAGGTGTTTTGGATCCAAGAGCCAAATGGATTCAAGACTGGAATAGGGTTTTCCTCCTAGTCTGCGCCACAGGCCTCATTGTGGACCCACTCTTTTTCTACGCCCTATCAATAAGTGACACCTATATGTGTCTCTTCGTCGACGGCTGGTTTGCCATTACCGTGACGGCGCTCAGGTGCATGACAGACGCCCTGCACGTGTGGAACATTTGGTTGCAGCTGAAAATGGCGAAGAGGTTCTCGTTTGGCAATATCGGAGCCGTGGTAGAAGAAGAAAGTGGTGGAATTATGAGGGATTATGGAAGTCCTCGCTCTGTCGCTCTTCGTTACTTGAAGGCTAAAAAGGGTTTCTTCTTTGATCTCTTTGTTACTCTTCCATTACCCCAGTTGGTATTATGGGTAGCAATTCCATGGCTGTTGAAAAGAGGATCAGTAACAATGGTGATGACAGTGTTTCTGATAATATTTCTGTTCCAATACCTTCCCAAAATCTATCATTCTGTCTGCCTTTTACGTCGCATGCAGAATCTCTCTGGCTACATTTTCGGAACTGTCTGGTGGGGTATTGCTCTAAATATGATAGCCTATTTTGTTGCTGCCCATGCAGCAGGAGCGTGCTGGTATCTGCTGGGGATTCAAAGGGCAGATAAGTGTCTGAGAGAGCAATGCAGAGAAGCAGAAGAGTCCTGTAATCCGAGAGTGTTGGCTTGTAAAGAAGCCATTTTTTATGGGGCAACGAGCATGATGGAAGAGAGGTCAGAGAGATTTGCATGGGTTGTGAACAAGAAAGCAAGGTCTATGTGCTTGGAGAGTGCAGAGAACTATAACTATGGAGCTTATAAATGGACTGTTCAGCTCGTCACCAATGATAGTCGCTTGGAGAAGATTCTTTTCCCAATATTTTGGGGCTTGATGACTCTTAGTACATTTGGGAACTTGGAAAGCACGACAGAATGGCTAGAAGTTGTCTTCAACATCATTGTATTAACCAGTGGGCTACTTTTAGTGACCATGTTGATCGGAAACATTAAGGTGTTTTTACATGCAACTACGTCCAAGAAACAAGCCATGCATTTAAAGATGAGGAATGTAGAGTGGTGGATGAGGAAGAGGTACTTACCTCAAGGATTCCAGCAACGTGTTCGTACCTACGAGCGGCAAAGATGGGCTGCCATGCGTGGCGTTGACGAGTGTGAGATGATCAGAAACCTGCCGGAGGGACTCCGGAGAGACATCAAGTATCATTTGTGCTTAGATTTGGTCAAACAGGTGCCTTTATTCCAACACATGGATAATCTAGTTCTCGAAAACATTTGTGACAGAGTAAAGTCTCTCATTTTCACCAAGGGCGAAACGATAGCTAGAGAAGGAGATCCAGTTCAAAGAATGCTGTTTGTAGTAAGAGGCCATCTTCAAAGCAGCCAAGTTCTAAGAGATGGAGTCAAAAGCTGTTGCATGTTAGGCCCTGGAAATTTCAGTGGAGATGAGCTTCTCTCATGGTGTCTCCGAAGACCATTTATCGAAAGATTACCTCCGTCGTCCTCGACTCTCGTCACTCTCGAGACAACGGAGGCCTTTGGCTTGGAGGCAGAGGACGTAAAATACGTGACCCAACATTTTCGTTACACGTTCATGAACGAAAAAGTCAAGAGAAGTGCGAGATATTACTCGCCCGGCTGGAGGACTTGGGCTGCAGTTGCAATTCAGCTAGCTTGGAGAAGATACAGGCATCGATTGACGCTTTCGTCGTTGTCGTTTATTCGCCCTCGTCGGCCGCTGTCTCGATCTTCGTCAATAAGTGAAGACAGGCTCAGGCTCTACACTGCTTTGCTCACTTCACCAAAGCCTAATCAAGAAAAGAATGATTTTTGA 2031 45.35 MASQQEISHASHSRYNDHEGTDEDEEEEEEEEEESYQSGDSKKRNCYRNGWSTGGVLDPRAKWIQDWNRVFLLVCATGLIVDPLFFYALSISDTYMCLFVDGWFAITVTALRCMTDALHVWNIWLQLKMAKRFSFGNIGAVVEEESGGIMRDYGSPRSVALRYLKAKKGFFFDLFVTLPLPQLVLWVAIPWLLKRGSVTMVMTVFLIIFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVAAHAAGACWYLLGIQRADKCLREQCREAEESCNPRVLACKEAIFYGATSMMEERSERFAWVVNKKARSMCLESAENYNYGAYKWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMHLKMRNVEWWMRKRYLPQGFQQRVRTYERQRWAAMRGVDECEMIRNLPEGLRRDIKYHLCLDLVKQVPLFQHMDNLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLETTEAFGLEAEDVKYVTQHFRYTFMNEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLSSLSFIRPRRPLSRSSSISEDRLRLYTALLTSPKPNQEKNDF 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6008200 6022616 + Bma004208.1 Bma10g00518 89581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00518 676 CDD CAP_ED 479 585 IPR000595 -
Bma10g00518 676 MobiDBLite consensus disorder prediction 20 35 - -
Bma10g00518 676 MobiDBLite consensus disorder prediction 1 41 - -
Bma10g00518 676 Gene3D Jelly Rolls 477 595 IPR014710 -
Bma10g00518 676 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 17 673 - -
Bma10g00518 676 SUPERFAMILY cAMP-binding domain-like 405 593 IPR018490 -
Bma10g00518 676 Pfam Cyclic nucleotide-binding domain 500 587 IPR000595 -
Bma10g00518 676 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 17 673 - -
Bma10g00518 676 Gene3D Helix hairpin bin 404 470 - -
Bma10g00518 676 Pfam Ion transport protein 67 396 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma10g00518 676 ProSiteProfiles cAMP/cGMP binding motif profile. 479 589 IPR000595 -
Bma10g00518 676 SUPERFAMILY Voltage-gated potassium channels 62 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00518 Bma-Chr10:6008200 Bma14g01442 Bma-Chr14:27763955 0 dispersed
Bma10g00518 Bma-Chr10:6008200 Bma08g00382 Bma-Chr8:8627202 1.81E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00518 K05391 - tcc:18593814 1079.32