Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00522 CTAATGGGGGAAAAGCTCGGCGGGGAAGGGTTGATAGAGGAACTATGCAATGGGTTCAATCTACTGATGGATAGTGATAAAGAGGTCATCACTTTGGAGAGCCTGAAAAAGAACGCTTCTTTGCTTGGGCTGCAGGATCTGAGCGACGAAGACATACGGTGTATGTTGAGCGAAGGGGACTACGACGGGGACGGTGCCCTCAATCGGATGGAGTTTTGCGTTTTGATGTTCAGATTAAGCCCTGATTTGATGAACCAGTCTTGGGTGTGGATTGATCAAGCTTTTGAGCATGAATTTAGGAATTCTTTTTAG 312 46.47 LMGEKLGGEGLIEELCNGFNLLMDSDKEVITLESLKKNASLLGLQDLSDEDIRCMLSEGDYDGDGALNRMEFCVLMFRLSPDLMNQSWVWIDQAFEHEFRNSF 103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6046254 6046565 + Bma004212.1 Bma10g00522 89585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00522 103 PANTHER CALCIUM-BINDING PROTEIN KRP1 1 101 - -
Bma10g00522 103 Pfam EF-hand domain pair 27 78 IPR002048 GO:0005509
Bma10g00522 103 ProSitePatterns EF-hand calcium-binding domain. 60 72 IPR018247 -
Bma10g00522 103 SUPERFAMILY EF-hand 10 87 IPR011992 -
Bma10g00522 103 Gene3D - 1 102 - -
Bma10g00522 103 ProSiteProfiles EF-hand calcium-binding domain profile. 47 82 IPR002048 GO:0005509
Bma10g00522 103 PANTHER CALCIUM-BINDING PROTEIN KIC 1 101 IPR044205 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00522 K24345 KIC; calcium-binding protein KIC and related proteins - zju:107430853 157.147
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00522 Bma13g01002 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00522 Bma-Chr10:6046254 Bma13g01002 Bma-Chr13:42225725 1.74E-53 dispersed
Bma10g00521 Bma-Chr10:6037137 Bma10g00522 Bma-Chr10:6046254 3.24E-69 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g382 . . . . Bpe09g00209 . Bma10g00522 Bma13g01002 Cmo16g00921 . . . . . . . . . . . . . . . . . . . . . . Cone3ag1371 Cone10ag1304 Cone8ag1470 Cone12ag1414 . . . Cme06g02311 Blo07g00932 Blo10g00788 Bda05g00750 Bda12g00873 . Bpe03g00815 . . . . . . Cma16g00813 . Car16g00864 Cpe14g00718 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000541 9 3 5 9 4 3 3 3 3 2 3 3 3 2 3 4 3 8 2 3 3 3 2 3 2 4 3 2 3 3 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00522 Bma_Chr10 FPKM 2.102564 0.0 4.082079 2.635762 3.278048 1.523424 2.141987 2.019046 1.341202 2.990879