Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma10g00523 TTATGCTACAGGTACTATTCCATGTATGGACACGTTGAAAGACTTGCTGAAGAAATAAAGAAAGGGGCAGCATCTGTTGAAGGTGTGGAAGCCAAATTATGGCAGGTTCCAGAGACTTTGCCGGAGAAGGTTCTTATCAAAATGAGTGCGCCACCCAAGAGTGATGTACCGATCATCACTCCTGATGAACTTGCGGAAGCTGATGGGTTTATTTTCGGCTTTCCAACAAGATTTGGAATGATGGCTGCCCAATTCAAAGCCTTTTTGGATGCAACTGGGGGTCTGTGGAGAACACAACAACTTGCAGGCAAGCCGGCTGGAATCTTCTACAGTACTGGATCCCAGGGTGGTGGACAGGAAACCACACCATTGACTGCCATAACTCAACTGGTTCACCATGGAATGATATTTGTTCCGATTGGGTACACATTCGGAGCAGGAATGTTCGAAATGGAAGCTGTCAAAGGTGGAAGCCCTTACGGGGCGGGTACTTATGCGGGTGATGGGTCTAGACAACCATCAGAGCTGGAGTTGGAGCAAGCATTTCACCAAGGCAAGTACATTGCCACTATCACCAAGAAGCTCAAGAAAGGAGGAGCTTAA 603 47.43 LCYRYYSMYGHVERLAEEIKKGAASVEGVEAKLWQVPETLPEKVLIKMSAPPKSDVPIITPDELAEADGFIFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYSTGSQGGGQETTPLTAITQLVHHGMIFVPIGYTFGAGMFEMEAVKGGSPYGAGTYAGDGSRQPSELELEQAFHQGKYIATITKKLKKGGA 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6077022 6078545 + Bma004214.1 Bma10g00523 89586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma10g00523 200 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 3 196 - -
Bma10g00523 200 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 5 195 IPR010089 GO:0003955|GO:0010181
Bma10g00523 200 SUPERFAMILY Flavoproteins 5 196 IPR029039 -
Bma10g00523 200 ProSiteProfiles Flavodoxin-like domain profile. 1 188 IPR008254 GO:0010181
Bma10g00523 200 Gene3D - 4 197 IPR029039 -
Bma10g00523 200 Pfam NADPH-dependent FMN reductase 13 140 IPR005025 GO:0016491
Bma10g00523 200 PANTHER FLAVOPROTEIN WRBA, FLAVOPROTEIN-LIKE DOMAIN PROTEIN-RELATED 3 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma10g00523 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - jre:109014187 369.777
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00523 Bma13g00995 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00335 Bma-Chr7:4316677 Bma10g00523 Bma-Chr10:6077022 4.93E-118 dispersed
Bma10g00523 Bma-Chr10:6077022 Bma13g00995 Bma-Chr13:42101536 1.73E-133 dispersed
Bma10g00523 Bma-Chr10:6077022 Bma13g01004 Bma-Chr13:42307265 3.40E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g383 . . . . Bpe09g00207 . Bma10g00523 Bma13g00995 Cmo16g00922 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0091 Cone9ag0120 Cone14ag1109 Cone15ag1123 . . . . Blo07g00931 Blo10g00789 Bda05g00749 Bda12g00874 . Bpe03g00814 . . . . . Cma04g00930 . Car04g00872 . . Cpe01g00845 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001002 3 2 2 5 4 3 4 2 3 2 2 2 4 2 2 4 2 3 2 3 2 2 2 3 3 3 2 3 3 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma10g00523 Bma_Chr10 FPKM 5.522029 6.050483 4.106466 4.868275 5.188198 4.169328 5.187595 6.735745 7.543186 6.7259